Install log for 'distances'

* installing *source* package ‘distances’ ...
** package ‘distances’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.5’
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/distances/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c distances-init.c -o distances-init.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c error.c -o error.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c get_dists.c -o get_dists.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c internal.c -o internal.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c max_dists.c -o max_dists.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c nn_search.c -o nn_search.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c nn_search_ann.cpp -o nn_search_ann.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c utils.c -o utils.o
(cd libann && R_AR="ar" R_CXX="/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17" R_CPPFLAGS="-DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include" R_CXXFLAGS="-fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 " make) || exit 1;
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/distances/src/libann'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/ANN.cpp -o src/ANN.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/brute.cpp -o src/brute.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/kd_tree.cpp -o src/kd_tree.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/kd_util.cpp -o src/kd_util.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/kd_split.cpp -o src/kd_split.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/kd_dump.cpp -o src/kd_dump.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/kd_search.cpp -o src/kd_search.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/kd_pr_search.cpp -o src/kd_pr_search.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/kd_fix_rad_search.cpp -o src/kd_fix_rad_search.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/bd_tree.cpp -o src/bd_tree.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/bd_search.cpp -o src/bd_search.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/bd_pr_search.cpp -o src/bd_pr_search.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/bd_fix_rad_search.cpp -o src/bd_fix_rad_search.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -Iinclude -c src/perf.cpp -o src/perf.o
ar -rcs libann.a src/ANN.o src/brute.o src/kd_tree.o src/kd_util.o src/kd_split.o src/kd_dump.o src/kd_search.o src/kd_pr_search.o src/kd_fix_rad_search.o src/bd_tree.o src/bd_search.o src/bd_pr_search.o src/bd_fix_rad_search.o src/perf.o
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/distances/src/libann'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o distances.so distances-init.o error.o get_dists.o internal.o max_dists.o nn_search.o nn_search_ann.o utils.o libann/libann.a
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/distances/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/distances/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/distances/src'
installing to /data/gannet/ripley/R/packages/tests-clang/distances.Rcheck/00LOCK-distances/00new/distances/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (distances)