* installing *source* package ‘deSolve’ ...
** package ‘deSolve’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.3’
using Fortran compiler: ‘flang-new version 19.1.3’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c DLLutil.c -o DLLutil.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c R_init_deSolve.c -o R_init_deSolve.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c brent.c -o brent.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_daspk.c -o call_daspk.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_euler.c -o call_euler.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_iteration.c -o call_iteration.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_lsoda.c -o call_lsoda.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_radau.c -o call_radau.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rk4.c -o call_rk4.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rkAuto.c -o call_rkAuto.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rkFixed.c -o call_rkFixed.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rkImplicit.c -o call_rkImplicit.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_zvode.c -o call_zvode.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c daux.f -o daux.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c ddaspk.f -o ddaspk.o
./ddaspk.f:2631:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (NEQ, PHI(1,1), 1, Y, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2632:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (NEQ, PHI(1,2), 1, YPRIME, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:3849:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (NEQ, R, 1, DELTA, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:4036:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (NEQ, YNEW, 1, Y, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:4037:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (NEQ, YPNEW, 1, YPRIME, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:4984:9: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (NEQ, SAVR, 1, DELTA, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5109:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (NEQ, DELTA, 1, SAVR, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5169:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (NEQ, SAVR, 1, DELTA, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5363:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY(NEQ, YNEW, 1, Y, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5364:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY(NEQ, YPNEW, 1, YPRIME, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5443:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY(NEQ, SAVR, 1, R, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:6028:25: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
IF (NRSTS .GT. 0) CALL DCOPY (NEQ, WM(LDL), 1, WM(LR),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:6245:7: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DSCAL (NEQ, TEM, V(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5444:7: previous reference to 'dscal'
CALL DSCAL (NEQ, RSQRTN, WT, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:6286:13: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (NEQ, V(1,1), 1, DL, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:6316:9: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DSCAL (NEQ, TEM, V(1,LL+1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:5444:7: previous reference to 'dscal'
CALL DSCAL (NEQ, RSQRTN, WT, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:6338:13: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (NEQ, V(1,1), 1, DL, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./ddaspk.f:2584:7: previous reference to 'dcopy'
CALL DCOPY (NEQ, Y, 1, PHI(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c deSolve_utils.c -o deSolve_utils.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c dintdy2.f -o dintdy2.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c dlinpk.f -o dlinpk.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c dlsoder.f -o dlsoder.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c dsparsk.f -o dsparsk.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c dvode.f -o dvode.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c errmsg.f -o errmsg.o
./dvode.f:433:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (N, Y, 1, RWORK(LYH), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:617:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (N, RWORK(LYH), 1, Y, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:701:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (N, RWORK(LYH), 1, Y, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1094:7: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DSCAL (N, R, DKY, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:454:7: previous reference to 'dscal'
CALL DSCAL (N, H0, RWORK(LF0), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1420:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (N, ACOR, 1, YH(1,LMAX), 1 )
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1524:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (N, ACOR, 1, YH(1,LMAX), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1551:7: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DSCAL (N, R, ACOR, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:454:7: previous reference to 'dscal'
CALL DSCAL (N, H0, RWORK(LF0), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1945:9: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DAXPY (N, EL(J), YH(1,LP1), 1, YH(1,J), 1 )
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1416:9: previous reference to 'daxpy'
CALL DAXPY (N, EL(J), ACOR, 1, YH(1,J), 1 )
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:2091:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (N, YH(1,1), 1, Y, 1 )
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:394:7: previous reference to 'dcopy'
CALL DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF)./errmsg.f,: 191:)9
: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
^ ^ ^ ^ ^ ^ ^c^a^l^l^ ^d^b^l^e^p^r^(^m^s^g^,^ ^-^1^,^ ^D^B^L^,^ ^2^)^
^ ^ ^ ^ ^ ^ ^ ^ ^^^^^^
^^^./dvode.f^:^2128^:^7^: ^warning: ^Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes^
^ ^ ^ ^ ^ ^ ^ ^C^A^L^L^ ^D^C
OP./errmsg.fY: 11(:N9,: previous reference to 'dblepr'S
A V F , 1 , A CcOaRl,l 1d)b
l e p r ( m s^g^,^ ^-^1^,^ ^D^B^L^,^ ^1^)^
^ ^ ^ ^ ^ ^ ^ ^ ^^^^^^^^^^^^^^^^^^
^./dvode.f^:^394^:^7^: ^previous reference to 'dcopy'^
^ ^ ^ ^ ^ ^ ^ ^C^A^L^L
DCOPY (N, RWORK(LWM), 1, RWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:2144:9: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DSCAL (N, CSCALE, Y, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:454:7: previous reference to 'dscal'
CALL DSCAL (N, H0, RWORK(LF0), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:2147:7: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes
CALL DAXPY (N, ONE, Y, 1, ACOR, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dvode.f:1416:9: previous reference to 'daxpy'
CALL DAXPY (N, EL(J), ACOR, 1, YH(1,J), 1 )
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_Aquaphy.c -o ex_Aquaphy.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_CCL4model.c -o ex_CCL4model.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_ChemicalDAE.c -o ex_ChemicalDAE.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_SCOC.c -o ex_SCOC.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c forcings.c -o forcings.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c lags.c -o lags.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c opkda1.f -o opkda1.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c opkdmain.f -o opkdmain.o
./opkda1.f:887:7: warning: Unrecognized compiler directive was ignored
Cdir$ ivdep
^^^^^^
./opkda1.f:986:7: warning: Unrecognized compiler directive was ignored
Cdir$ ivdep
^^^^^^
./opkda1.f:1048:7: warning: Unrecognized compiler directive was ignored
Cdir$ ivdep
^^^^^^
./opkda1.f:4183:7: warning: Unrecognized compiler directive was ignored
CDIR$ IVDEP
^^^^^^
./opkda1.f:4304:7: warning: Unrecognized compiler directive was ignored
CDIR$ IVDEP
^^^^^^
./opkda1.f:4472:7: warning: Unrecognized compiler directive was ignored
CDIR$ IVDEP
^^^^^^
./opkda1.f:5222:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (NG, GX, 1, G1, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5229:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (NG, GX, 1, G1, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5234:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (NG, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5244:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (NG, G1, 1, GX, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5259:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (NG, G1, 1, GX, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5268:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
420 CALL DCOPY (NG, G1, 1, GX, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5540:7: warning: Unrecognized compiler directive was ignored
CDIR$ IVDEP
^^^^^^
./opkda1.f:5641:7: warning: Unrecognized compiler directive was ignored
CDIR$ IVDEP
^^^^^^
./opkda1.f:5703:7: warning: Unrecognized compiler directive was ignored
CDIR$ IVDEP
^^^^^^
./opkda1.f:5963:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (N, X, 1, WM(LB), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5987:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (N, X, 1, WM(LB), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6010:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (N, X, 1, WM(LR), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6030:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (N, X, 1, WM(LR), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6048:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL DCOPY (N, X, 1, WM(LB), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6185:7: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DSCAL (N, TEM, V(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5964:7: previous reference to 'dscal'
CALL DSCAL (N, RSQRTN, EWT, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6234:9: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DSCAL (N, TEM, V(1,LL+1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5964:7: previous reference to 'dscal'
CALL DSCAL (N, RSQRTN, EWT, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6636:7: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DSCAL (N, TEM, V(1,1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5964:7: previous reference to 'dscal'
CALL DSCAL (N, RSQRTN, EWT, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6673:13: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL DCOPY (N, V(1,1), 1, DL, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5043:7: previous reference to 'dcopy'
CALL DCOPY (NGC, GX, 1, G0, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6703:9: warning: Reference to the procedure 'dscal' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DSCAL (N, TEM, V(1,LL+1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:5964:7: previous reference to 'dscal'
CALL DSCAL (N, RSQRTN, EWT, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6872:7: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DAXPY (N, ALPHA, P, 1, X, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6874:7: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DAXPY (N, ALPHA, W, 1, R, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:7027:7: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DAXPY (N, ALPHA, P, 1, X, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:7029:7: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
CALL DAXPY (N, ALPHA, W, 1, R, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:7317:16: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes
CALL DAXPY (N-K, T, A(K+1,K), 1, A(K+1,J), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:7458:13: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes
CALL DAXPY (K-1, T, A(1,K), 1, B(1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:7686:13: warning: Reference to the procedure 'daxpy' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes
CALL DAXPY (K-1, T, A(1,K), 1, B(1), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./opkda1.f:6264:9: previous reference to 'daxpy'
CALL DAXPY (N, B(I), V(1,I), 1, X, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c radau5.f -o radau5.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c radau5a.f -o radau5a.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_auto.c -o rk_auto.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_fixed.c -o rk_fixed.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_implicit.c -o rk_implicit.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_util.c -o rk_util.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rprintf.c -o rprintf.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c twoDmap.c -o twoDmap.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c zvode.f -o zvode.o
./zvode.f:1363:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL ZCOPY (N, Y, 1, ZWORK(LYH), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1540:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL ZCOPY (N, ZWORK(LYH), 1, Y, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1614:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL ZCOPY (N, ZWORK(LYH), 1, Y, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:2318:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL ZCOPY (N, ACOR, 1, YH(1,LMAX), 1 )
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:2422:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL ZCOPY (N, ACOR, 1, YH(1,LMAX), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:2985:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL ZCOPY (N, YH(1,1), 1, Y, 1 )
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:3022:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
CALL ZCOPY (N, SAVF, 1, ACOR, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:3207:23: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
IF (JSV .EQ. 1) CALL ZCOPY (LENP, WM, 1, WM(LOCJS), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:3233:23: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
IF (JSV .EQ. 1) CALL ZCOPY (LENP, WM, 1, WM(LOCJS), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:3239:7: warning: Reference to the procedure 'zcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
CALL ZCOPY (LENP, WM(LOCJS), 1, WM, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./zvode.f:1327:7: previous reference to 'zcopy'
CALL ZCOPY (N, ZWORK(LWM), 1, ZWORK(LSAVF), 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o deSolve.so DLLutil.o R_init_deSolve.o brent.o call_daspk.o call_euler.o call_iteration.o call_lsoda.o call_radau.o call_rk4.o call_rkAuto.o call_rkFixed.o call_rkImplicit.o call_zvode.o daux.o ddaspk.o deSolve_utils.o dintdy2.o dlinpk.o dlsoder.o dsparsk.o dvode.o errmsg.o ex_Aquaphy.o ex_CCL4model.o ex_ChemicalDAE.o ex_SCOC.o forcings.o lags.o opkda1.o opkdmain.o radau5.o radau5a.o rk_auto.o rk_fixed.o rk_implicit.o rk_util.o rprintf.o twoDmap.o zvode.o -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
installing to /data/gannet/ripley/R/packages/tests-clang/deSolve.Rcheck/00LOCK-deSolve/00new/deSolve/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘matplot’ in package ‘deSolve’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (deSolve)