* installing *source* package ‘conleyreg’ ...
** package ‘conleyreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.6’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/conleyreg/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c XeeXhC.cpp -o XeeXhC.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c XeeXhC_R.cpp -o XeeXhC_R.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c dist_mat.cpp -o dist_mat.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c distance_functions.cpp -o distance_functions.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c distance_matrices.cpp -o distance_matrices.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c isbalanced.cpp -o isbalanced.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c lp.cpp -o lp.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c lp_filling.cpp -o lp_filling.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c lp_filling_R.cpp -o lp_filling_R.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c lp_vcov.cpp -o lp_vcov.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c ols.cpp -o ols.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c openmp_installed.cpp -o openmp_installed.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c time_dist.cpp -o time_dist.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o conleyreg.so RcppExports.o XeeXhC.o XeeXhC_R.o dist_mat.o distance_functions.o distance_matrices.o isbalanced.o lp.o lp_filling.o lp_filling_R.o lp_vcov.o ols.o openmp_installed.o time_dist.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/conleyreg/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/conleyreg/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/conleyreg/src'
installing to /data/gannet/ripley/R/packages/tests-clang/conleyreg.Rcheck/00LOCK-conleyreg/00new/conleyreg/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (conleyreg)