* installing *source* package ‘commonmark’ ... ** package ‘commonmark’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 19.1.5’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/commonmark/src' rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c extensions.c -o extensions.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c wrapper.c -o wrapper.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/cmark.c -o cmark/cmark.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/node.c -o cmark/node.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/iterator.c -o cmark/iterator.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/blocks.c -o cmark/blocks.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/inlines.c -o cmark/inlines.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/scanners.c -o cmark/scanners.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/utf8.c -o cmark/utf8.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/buffer.c -o cmark/buffer.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/references.c -o cmark/references.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/render.c -o cmark/render.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/man.c -o cmark/man.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/xml.c -o cmark/xml.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/html.c -o cmark/html.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/commonmark.c -o cmark/commonmark.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/latex.c -o cmark/latex.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/arena.c -o cmark/arena.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/linked_list.c -o cmark/linked_list.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/plugin.c -o cmark/plugin.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/registry.c -o cmark/registry.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/syntax_extension.c -o cmark/syntax_extension.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/plaintext.c -o cmark/plaintext.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/footnotes.c -o cmark/footnotes.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmark/map.c -o cmark/map.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c extensions/autolink.c -o extensions/autolink.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c extensions/core-extensions.c -o extensions/core-extensions.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c extensions/ext_scanners.c -o extensions/ext_scanners.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c extensions/strikethrough.c -o extensions/strikethrough.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c extensions/table.c -o extensions/table.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c extensions/tagfilter.c -o extensions/tagfilter.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c extensions/tasklist.c -o extensions/tasklist.o ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o /usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/commonmark/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/commonmark/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/commonmark/src' installing to /data/gannet/ripley/R/packages/tests-clang/commonmark.Rcheck/00LOCK-commonmark/00new/commonmark/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (commonmark)