* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/cocoon.Rcheck’
* using R Under development (unstable) (2025-02-19 r87749)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 20.1.0-rc2
    flang version 20.1.0-rc2
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘cocoon/DESCRIPTION’ ... OK
* this is package ‘cocoon’ version ‘0.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cocoon’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/cocoon-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/14s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [10s/13s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [18s/30s] ERROR
  Running ‘testthat.R’ [17s/30s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(cocoon)
  > 
  > test_check("cocoon")
  [ FAIL 15 | WARN 0 | SKIP 1 | PASS 274 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test-format_statvalues.R:64:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-format_stats_lmerModLmerTest.R:55:3'): formatting lm linear models works properly ──
  format_stats(test_lmer2, "a") (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = .748" (`expected`).
  
  `actual`:   "_β_ = -0.104, SE = 0.310, _t_ = -0.337, _p_ = .745"
  `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = .748"
  ── Failure ('test-format_stats_lmerModLmerTest.R:56:3'): formatting lm linear models works properly ──
  format_stats(test_lmer2, "a", digits = 2) (`actual`) not equal to "_β_ = -0.10, SE = 0.31, _t_ = -0.33, _p_ = .748" (`expected`).
  
  `actual`:   "_β_ = -0.10, SE = 0.31, _t_ = -0.34, _p_ = .745"
  `expected`: "_β_ = -0.10, SE = 0.31, _t_ = -0.33, _p_ = .748"
  ── Failure ('test-format_stats_lmerModLmerTest.R:57:3'): formatting lm linear models works properly ──
  format_stats(test_lmer2, "a", pdigits = 2) (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = .75" (`expected`).
  
  `actual`:   "_β_ = -0.104, SE = 0.310, _t_ = -0.337, _p_ = .74"
  `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = .75"
  ── Failure ('test-format_stats_lmerModLmerTest.R:58:3'): formatting lm linear models works properly ──
  format_stats(test_lmer2, "a", pzero = TRUE) (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = 0.748" (`expected`).
  
  `actual`:   "_β_ = -0.104, SE = 0.310, _t_ = -0.337, _p_ = 0.745"
  `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = 0.748"
  ── Failure ('test-format_stats_lmerModLmerTest.R:59:3'): formatting lm linear models works properly ──
  format_stats(test_lmer2, "a", full = FALSE) (`actual`) not equal to "_β_ = -0.103, _p_ = .748" (`expected`).
  
  `actual`:   "_β_ = -0.104, _p_ = .745"
  `expected`: "_β_ = -0.103, _p_ = .748"
  ── Failure ('test-format_stats_lmerModLmerTest.R:60:3'): formatting lm linear models works properly ──
  format_stats(test_lmer2, "a", italics = FALSE) (`actual`) not equal to "β = -0.103, SE = 0.310, t = -0.333, p = .748" (`expected`).
  
  `actual`:   "β = -0.104, SE = 0.310, t = -0.337, p = .745"
  `expected`: "β = -0.103, SE = 0.310, t = -0.333, p = .748"
  ── Failure ('test-format_stats_lmerModLmerTest.R:61:3'): formatting lm linear models works properly ──
  format_stats(test_lmer2, "a", type = "latex") (`actual`) not equal to "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333, $p$ = .748" (`expected`).
  
  `actual`:   "$\\beta$ = -0.104, SE = 0.310, $t$ = -0.337, $p$ = .745"
  `expected`: "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333, $p$ = .748"
  ── Failure ('test-format_stats_merMod.R:59:3'): formatting lm linear models works properly ──
  format_stats(test_lmer, term = "a") (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333" (`expected`).
  
  `actual`:   "_β_ = -0.104, SE = 0.310, _t_ = -0.337"
  `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333"
  ── Failure ('test-format_stats_merMod.R:60:3'): formatting lm linear models works properly ──
  format_stats(test_lmer, "a", digits = 2) (`actual`) not equal to "_β_ = -0.10, SE = 0.31, _t_ = -0.33" (`expected`).
  
  `actual`:   "_β_ = -0.10, SE = 0.31, _t_ = -0.34"
  `expected`: "_β_ = -0.10, SE = 0.31, _t_ = -0.33"
  ── Failure ('test-format_stats_merMod.R:61:3'): formatting lm linear models works properly ──
  format_stats(test_lmer, "a", pdigits = 2) (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333" (`expected`).
  
  `actual`:   "_β_ = -0.104, SE = 0.310, _t_ = -0.337"
  `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333"
  ── Failure ('test-format_stats_merMod.R:62:3'): formatting lm linear models works properly ──
  format_stats(test_lmer, "a", pzero = TRUE) (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333" (`expected`).
  
  `actual`:   "_β_ = -0.104, SE = 0.310, _t_ = -0.337"
  `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333"
  ── Failure ('test-format_stats_merMod.R:63:3'): formatting lm linear models works properly ──
  format_stats(test_lmer, "a", full = FALSE) (`actual`) not equal to "_β_ = -0.103" (`expected`).
  
  `actual`:   "_β_ = -0.104"
  `expected`: "_β_ = -0.103"
  ── Failure ('test-format_stats_merMod.R:64:3'): formatting lm linear models works properly ──
  format_stats(test_lmer, "a", italics = FALSE) (`actual`) not equal to "β = -0.103, SE = 0.310, t = -0.333" (`expected`).
  
  `actual`:   "β = -0.104, SE = 0.310, t = -0.337"
  `expected`: "β = -0.103, SE = 0.310, t = -0.333"
  ── Failure ('test-format_stats_merMod.R:65:3'): formatting lm linear models works properly ──
  format_stats(test_lmer, "a", type = "latex") (`actual`) not equal to "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333" (`expected`).
  
  `actual`:   "$\\beta$ = -0.104, SE = 0.310, $t$ = -0.337"
  `expected`: "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333"
  ── Failure ('test-format_stats_merMod.R:66:3'): formatting lm linear models works properly ──
  format_stats(test_lmer, "a", type = "latex", dfs = "sub") (`actual`) not equal to "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333" (`expected`).
  
  `actual`:   "$\\beta$ = -0.104, SE = 0.310, $t$ = -0.337"
  `expected`: "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333"
  
  [ FAIL 15 | WARN 0 | SKIP 1 | PASS 274 ]
  Error: Test failures
  In addition: Warning messages:
  1: In optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
    convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
  2: In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv,  :
    Model failed to converge with max|grad| = 0.350361 (tol = 0.002, component 1)
  3: In optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
    convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
  4: In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv,  :
    Model failed to converge with max|grad| = 0.350361 (tol = 0.002, component 1)
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [12s/15s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR