• using R Under development (unstable) (2025-02-15 r87725)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 19.1.7     flang-new version 19.1.7
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘cocoon/DESCRIPTION’ ... OK
• this is package ‘cocoon’ version ‘0.2.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘cocoon’ can be installed ... [6s/12s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/28s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [11s/40s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [19s/67s] ERROR   Running ‘testthat.R’ [19s/65s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(cocoon)   >   > test_check("cocoon")   [ FAIL 15 | WARN 0 | SKIP 1 | PASS 274 ]      ══ Skipped tests (1) ═══════════════════════════════════════════════════════════   • On CRAN (1): 'test-format_statvalues.R:64:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-format_stats_lmerModLmerTest.R:55:3'): formatting lm linear models works properly ──   format_stats(test_lmer2, "a") (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = .748" (`expected`).      `actual`: "_β_ = -0.104, SE = 0.310, _t_ = -0.337, _p_ = .745"   `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = .748"   ── Failure ('test-format_stats_lmerModLmerTest.R:56:3'): formatting lm linear models works properly ──   format_stats(test_lmer2, "a", digits = 2) (`actual`) not equal to "_β_ = -0.10, SE = 0.31, _t_ = -0.33, _p_ = .748" (`expected`).      `actual`: "_β_ = -0.10, SE = 0.31, _t_ = -0.34, _p_ = .745"   `expected`: "_β_ = -0.10, SE = 0.31, _t_ = -0.33, _p_ = .748"   ── Failure ('test-format_stats_lmerModLmerTest.R:57:3'): formatting lm linear models works properly ──   format_stats(test_lmer2, "a", pdigits = 2) (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = .75" (`expected`).      `actual`: "_β_ = -0.104, SE = 0.310, _t_ = -0.337, _p_ = .74"   `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = .75"   ── Failure ('test-format_stats_lmerModLmerTest.R:58:3'): formatting lm linear models works properly ──   format_stats(test_lmer2, "a", pzero = TRUE) (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = 0.748" (`expected`).      `actual`: "_β_ = -0.104, SE = 0.310, _t_ = -0.337, _p_ = 0.745"   `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333, _p_ = 0.748"   ── Failure ('test-format_stats_lmerModLmerTest.R:59:3'): formatting lm linear models works properly ──   format_stats(test_lmer2, "a", full = FALSE) (`actual`) not equal to "_β_ = -0.103, _p_ = .748" (`expected`).      `actual`: "_β_ = -0.104, _p_ = .745"   `expected`: "_β_ = -0.103, _p_ = .748"   ── Failure ('test-format_stats_lmerModLmerTest.R:60:3'): formatting lm linear models works properly ──   format_stats(test_lmer2, "a", italics = FALSE) (`actual`) not equal to "β = -0.103, SE = 0.310, t = -0.333, p = .748" (`expected`).      `actual`: "β = -0.104, SE = 0.310, t = -0.337, p = .745"   `expected`: "β = -0.103, SE = 0.310, t = -0.333, p = .748"   ── Failure ('test-format_stats_lmerModLmerTest.R:61:3'): formatting lm linear models works properly ──   format_stats(test_lmer2, "a", type = "latex") (`actual`) not equal to "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333, $p$ = .748" (`expected`).      `actual`: "$\\beta$ = -0.104, SE = 0.310, $t$ = -0.337, $p$ = .745"   `expected`: "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333, $p$ = .748"   ── Failure ('test-format_stats_merMod.R:59:3'): formatting lm linear models works properly ──   format_stats(test_lmer, term = "a") (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333" (`expected`).      `actual`: "_β_ = -0.104, SE = 0.310, _t_ = -0.337"   `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333"   ── Failure ('test-format_stats_merMod.R:60:3'): formatting lm linear models works properly ──   format_stats(test_lmer, "a", digits = 2) (`actual`) not equal to "_β_ = -0.10, SE = 0.31, _t_ = -0.33" (`expected`).      `actual`: "_β_ = -0.10, SE = 0.31, _t_ = -0.34"   `expected`: "_β_ = -0.10, SE = 0.31, _t_ = -0.33"   ── Failure ('test-format_stats_merMod.R:61:3'): formatting lm linear models works properly ──   format_stats(test_lmer, "a", pdigits = 2) (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333" (`expected`).      `actual`: "_β_ = -0.104, SE = 0.310, _t_ = -0.337"   `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333"   ── Failure ('test-format_stats_merMod.R:62:3'): formatting lm linear models works properly ──   format_stats(test_lmer, "a", pzero = TRUE) (`actual`) not equal to "_β_ = -0.103, SE = 0.310, _t_ = -0.333" (`expected`).      `actual`: "_β_ = -0.104, SE = 0.310, _t_ = -0.337"   `expected`: "_β_ = -0.103, SE = 0.310, _t_ = -0.333"   ── Failure ('test-format_stats_merMod.R:63:3'): formatting lm linear models works properly ──   format_stats(test_lmer, "a", full = FALSE) (`actual`) not equal to "_β_ = -0.103" (`expected`).      `actual`: "_β_ = -0.104"   `expected`: "_β_ = -0.103"   ── Failure ('test-format_stats_merMod.R:64:3'): formatting lm linear models works properly ──   format_stats(test_lmer, "a", italics = FALSE) (`actual`) not equal to "β = -0.103, SE = 0.310, t = -0.333" (`expected`).      `actual`: "β = -0.104, SE = 0.310, t = -0.337"   `expected`: "β = -0.103, SE = 0.310, t = -0.333"   ── Failure ('test-format_stats_merMod.R:65:3'): formatting lm linear models works properly ──   format_stats(test_lmer, "a", type = "latex") (`actual`) not equal to "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333" (`expected`).      `actual`: "$\\beta$ = -0.104, SE = 0.310, $t$ = -0.337"   `expected`: "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333"   ── Failure ('test-format_stats_merMod.R:66:3'): formatting lm linear models works properly ──   format_stats(test_lmer, "a", type = "latex", dfs = "sub") (`actual`) not equal to "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333" (`expected`).      `actual`: "$\\beta$ = -0.104, SE = 0.310, $t$ = -0.337"   `expected`: "$\\beta$ = -0.103, SE = 0.310, $t$ = -0.333"      [ FAIL 15 | WARN 0 | SKIP 1 | PASS 274 ]   Error: Test failures   In addition: Warning messages:   1: In optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower, :     convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).   2: In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :     Model failed to converge with max|grad| = 0.350361 (tol = 0.002, component 1)   3: In optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower, :     convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).   4: In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :     Model failed to converge with max|grad| = 0.350361 (tol = 0.002, component 1)   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [13s/49s] OK
• checking PDF version of manual ... [8s/22s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR