- using R Under development (unstable) (2025-02-19 r87749)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 20.1.0-rc2
flang version 20.1.0-rc2
- running under: Fedora Linux 40 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘clubSandwich/DESCRIPTION’ ... OK
- this is package ‘clubSandwich’ version ‘0.5.11’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘clubSandwich’ can be installed ... [10s/13s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [21s/25s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [15s/23s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [255s/273s] ERROR
Running ‘testthat.R’ [255s/272s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(clubSandwich)
Registered S3 method overwritten by 'clubSandwich':
method from
bread.mlm sandwich
>
> test_check("clubSandwich")
[ FAIL 4 | WARN 32 | SKIP 28 | PASS 1411 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• Need to understand target-unbiasedness for ivreg objects. (2):
'test_AER_ivreg.R:141:3', 'test_ivreg_ivreg.R:141:3'
• On CRAN (24): 'test_Wald.R:119:3', 'test_Wald.R:173:3',
'test_geeglm.R:161:3', 'test_linear_contrast.R:136:3',
'test_lme_3level.R:39:3', 'test_lme_3level.R:76:3',
'test_lme_3level.R:116:3', 'test_lme_3level.R:127:3',
'test_lme_3level.R:138:3', 'test_lme_3level.R:179:3', 'test_lme_MVML.R:4:1',
'test_lmerMod.R:124:3', 'test_mlm.R:94:3',
'test_plm-first-differences.R:92:3', 'test_plm-fixed-effects.R:146:3',
'test_plm-unbalanced-fixed-effects.R:170:3', 'test_rma-ls.R:26:3',
'test_rma-mv.R:101:3', 'test_rma-mv.R:220:3', 'test_rma-mv.R:321:3',
'test_rma-uni.R:76:3', 'test_robu.R:173:3', 'test_robu.R:210:3',
'test_robu.R:252:3'
• empty test (1): 'test_estfun.R:50:1'
• packageVersion("plm") > "2.6-1" is TRUE (1):
'test_plm-first-differences.R:41:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_lmerMod.R:166:3'): lmer agrees with lme ──────────────────────
bread(lmer_fit)/bread(lme_fit) not equal to matrix(1, p, p).
9/36 mismatches (average diff: 1.54)
[1] 2.54 - 1 == 1.54
[3] 2.54 - 1 == 1.54
[4] 2.54 - 1 == 1.54
[13] 2.54 - 1 == 1.54
[15] 2.54 - 1 == 1.54
[16] 2.54 - 1 == 1.54
[19] 2.54 - 1 == 1.54
[21] 2.54 - 1 == 1.54
[22] 2.54 - 1 == 1.54
── Failure ('test_lmerMod.R:167:3'): lmer agrees with lme ──────────────────────
targetVariance(lmer_fit) not equal to targetVariance(lme_fit).
Component 1: Mean relative difference: 0.6081393
Component 2: Mean relative difference: 0.6081393
Component 3: Mean relative difference: 0.6081393
Component 4: Mean relative difference: 0.6081393
Component 5: Mean relative difference: 0.6081393
Component 6: Mean relative difference: 0.6081393
Component 7: Mean relative difference: 0.6081393
Component 8: Mean relative difference: 0.6081393
Component 9: Mean relative difference: 0.6081393
...
── Failure ('test_lmerMod.R:168:3'): lmer agrees with lme ──────────────────────
weightMatrix(lmer_fit) not equal to weightMatrix(lme_fit).
Component 1: Mean relative difference: 0.0009284284
Component 2: Mean relative difference: 0.0009284284
Component 3: Mean relative difference: 0.0009284284
Component 4: Mean relative difference: 0.0009284284
Component 5: Mean relative difference: 0.0009284284
Component 6: Mean relative difference: 0.0009284284
Component 7: Mean relative difference: 0.0009284284
Component 8: Mean relative difference: 0.0009284284
Component 9: Mean relative difference: 0.0009284284
...
── Failure ('test_lmerMod.R:182:3'): lmer agrees with lme ──────────────────────
a$Fstat not equal to b$Fstat.
88/280 mismatches (average diff: 0.354)
[8] 31.5 - 30.6 == 0.956
[28] 1328.1 - 1327.8 == 0.350
[29] 1320.5 - 1320.1 == 0.369
[30] 1361.8 - 1361.7 == 0.118
[31] 1477.0 - 1477.2 == -0.265
[32] 22.7 - 22.5 == 0.179
[36] 1331.3 - 1330.9 == 0.351
[37] 1323.6 - 1323.3 == 0.369
[38] 1365.0 - 1364.9 == 0.118
...
Backtrace:
▆
1. └─clubSandwich:::compare_Waldtests(Wald_lmer, Wald_lme) at test_lmerMod.R:182:3
2. └─testthat::expect_equal(a$Fstat, b$Fstat, tolerance = tol)
[ FAIL 4 | WARN 32 | SKIP 28 | PASS 1411 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [35s/49s] OK
- checking PDF version of manual ... [9s/11s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR