• using R Under development (unstable) (2024-12-10 r87437)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 19.1.5     flang-new version 19.1.5
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘causalPAF/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘causalPAF’ version ‘1.2.5’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘causalPAF’ can be installed ... [16s/22s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [25s/35s] OK
• checking Rd files ... NOTE checkRd: (-1) eval_make_DAG.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_DAG.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) indirect_PAF_Sjolander_onesimulation.Rd:65: Lost braces; missing escapes or markup?     65 | \if{html}{\figure{CausalDAG.jpg} {options: width=100 alt="Causal Bayesian network DAG"} }        | ^ checkRd: (-1) path_specific_onesimulation.Rd:54: Lost braces; missing escapes or markup?     54 | \if{html}{\figure{CausalDAG.jpg} {options: width=100 alt="Causal Bayesian network DAG"} }        | ^ checkRd: (-1) strokedata.Rd:49: Lost braces; missing escapes or markup?     49 | individual’s behaviour SB = {Smoking, Alcohol intake, inactivity, diet and stress},        | ^ checkRd: (-1) strokedata.Rd:50: Lost braces; missing escapes or markup?     50 | their physiology SP = {High blood pressure, ApoB/ApoA ratio, Waist hip ratio}        | ^ checkRd: (-1) strokedata.Rd:52: Lost braces; missing escapes or markup?     52 | SD = {Cardiac risk factors, Preclinical diabetes}.        | ^ checkRd: (-1) strokedata.Rd:60: Lost braces; missing escapes or markup?     60 | {SC , SB , SP , SD , Y }, and summarized by the causal graphs in        | ^ checkRd: (-1) strokedata_smallSample.Rd:49: Lost braces; missing escapes or markup?     49 | individual’s behaviour SB = {Smoking, Alcohol intake, inactivity, diet and stress},        | ^ checkRd: (-1) strokedata_smallSample.Rd:50: Lost braces; missing escapes or markup?     50 | their physiology SP = {High blood pressure, ApoB/ApoA ratio, Waist hip ratio}        | ^ checkRd: (-1) strokedata_smallSample.Rd:52: Lost braces; missing escapes or markup?     52 | SD = {Cardiac risk factors, Pre clinical diabetes}.        | ^ checkRd: (-1) strokedata_smallSample.Rd:60: Lost braces; missing escapes or markup?     60 | {SC , SB , SP , SD , Y }, and summarized by the causal graphs in        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... OK   Running ‘spelling.R’
• checking PDF version of manual ... [10s/13s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE