* installing *source* package ‘carbondate’ ...
** this is package ‘carbondate’ version ‘1.0.1’
** package ‘carbondate’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 20.1.0-rc2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/carbondate/src'
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c cpp11.cpp -o cpp11.o
In file included from cpp11.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/declarations.hpp:13:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from cpp11.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/declarations.hpp:13:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c find_hpd.cpp -o find_hpd.o
In file included from find_hpd.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from find_hpd.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c find_predictive_density.cpp -o find_predictive_density.o
In file included from find_predictive_density.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from find_predictive_density.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c polya_urn_update_helpers.cpp -o polya_urn_update_helpers.o
In file included from polya_urn_update_helpers.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from polya_urn_update_helpers.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c polya_urn_update_step.cpp -o polya_urn_update_step.o
In file included from polya_urn_update_step.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from polya_urn_update_step.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sample.cpp -o sample.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c update_calendar_ages.cpp -o update_calendar_ages.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c update_calendar_ages_rjpp.cpp -o update_calendar_ages_rjpp.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c update_helpers.cpp -o update_helpers.o
In file included from update_calendar_ages.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from update_calendar_ages.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
In file included from update_calendar_ages_rjpp.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from update_calendar_ages_rjpp.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c walker_update_helpers.cpp -o walker_update_helpers.o
2 warnings generated.
In file included from walker_update_helpers.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from walker_update_helpers.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c walker_update_step.cpp -o walker_update_step.o
2 warnings generated.
In file included from walker_update_step.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from walker_update_step.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o carbondate.so cpp11.o find_hpd.o find_predictive_density.o polya_urn_update_helpers.o polya_urn_update_step.o sample.o update_calendar_ages.o update_calendar_ages_rjpp.o update_helpers.o walker_update_helpers.o walker_update_step.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/carbondate/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/carbondate/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/carbondate/src'
installing to /data/gannet/ripley/R/packages/tests-clang/carbondate.Rcheck/00LOCK-carbondate/00new/carbondate/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (carbondate)