* installing *source* package ‘c212’ ...
** package ‘c212’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/c212/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c2121a.cpp -o c2121a.o
In file included from c2121a.cpp:5:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c2121a_poisson_mc_hier2_lev0.cpp -o c2121a_poisson_mc_hier2_lev0.o
In file included from c2121a_poisson_mc_hier2_lev0.cpp:6:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c2121a_poisson_mc_hier2_lev1.cpp -o c2121a_poisson_mc_hier2_lev1.o
In file included from c2121a_poisson_mc_hier2_lev1.cpp:6:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from c2121a_poisson_mc_hier2_lev1.cpp:16:
./c2121a_poisson_mc_hier2_lev1.h:53:16: warning: 'c2121a_poisson_mc_hier2_lev1::getL2Samples' hides overloaded virtual function [-Woverloaded-virtual]
53 | virtual SEXP getL2Samples(double*** &data);
| ^
./c2121a_poisson_mc_hier2_lev0.h:114:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::getL2Samples' declared here: type mismatch at 1st parameter ('double ****&' vs 'double ***&')
114 | virtual SEXP getL2Samples(double**** &data);
| ^
2 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c2121a_poisson_mc_hier3_lev0.cpp -o c2121a_poisson_mc_hier3_lev0.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c2121a_poisson_mc_hier3_lev1.cpp -o c2121a_poisson_mc_hier3_lev1.o
In file included from c2121a_poisson_mc_hier3_lev1.cpp:6:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from c2121a_poisson_mc_hier3_lev0.cpp:6:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from c2121a_poisson_mc_hier3_lev1.cpp:16:
./c2121a_poisson_mc_hier3_lev0.h:52:16: warning: 'c2121a_poisson_mc_hier3_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier2_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::init' declared here: different number of parameters (32 vs 40)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c2121a_poisson_mc_hier3_lev1.cpp:17:
./c2121a_poisson_mc_hier3_lev2.h:53:16: warning: 'c2121a_poisson_mc_hier3_lev2::getL3Samples' hides overloaded virtual function [-Woverloaded-virtual]
53 | virtual SEXP getL3Samples(double** &data);
| ^
./c2121a_poisson_mc_hier3_lev0.h:93:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::getL3Samples' declared here: type mismatch at 1st parameter ('double ***&' vs 'double **&')
93 | virtual SEXP getL3Samples(double*** &data);
| ^
In file included from c2121a_poisson_mc_hier3_lev1.cpp:18:
./c2121a_poisson_mc_hier3_lev1.h:58:16: warning: 'c2121a_poisson_mc_hier3_lev1::getL2Samples' hides overloaded virtual function [-Woverloaded-virtual]
58 | virtual SEXP getL2Samples(double*** &data);
| ^
./c2121a_poisson_mc_hier2_lev0.h:114:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::getL2Samples' declared here: type mismatch at 1st parameter ('double ****&' vs 'double ***&')
114 | virtual SEXP getL2Samples(double**** &data);
| ^
In file included from c2121a_poisson_mc_hier3_lev0.cpp:15:
./c2121a_poisson_mc_hier3_lev0.h:52:16: warning: 'c2121a_poisson_mc_hier3_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier2_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::init' declared here: different number of parameters (32 vs 40)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
4 warnings generated.
2 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c2121a_poisson_mc_hier3_lev2.cpp -o c2121a_poisson_mc_hier3_lev2.o
In file included from c2121a_poisson_mc_hier3_lev2.cpp:6:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from c2121a_poisson_mc_hier3_lev2.cpp:16:
./c2121a_poisson_mc_hier3_lev0.h:52:16: warning: 'c2121a_poisson_mc_hier3_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier2_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::init' declared here: different number of parameters (32 vs 40)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c2121a_poisson_mc_hier3_lev2.cpp:17:
./c2121a_poisson_mc_hier3_lev2.h:53:16: warning: 'c2121a_poisson_mc_hier3_lev2::getL3Samples' hides overloaded virtual function [-Woverloaded-virtual]
53 | virtual SEXP getL3Samples(double** &data);
| ^
./c2121a_poisson_mc_hier3_lev0.h:93:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::getL3Samples' declared here: type mismatch at 1st parameter ('double ***&' vs 'double **&')
93 | virtual SEXP getL3Samples(double*** &data);
| ^
3 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c212BB.cpp -o c212BB.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c212BB_poisson_mc_hier2_lev0.cpp -o c212BB_poisson_mc_hier2_lev0.o
In file included from c212BB_poisson_mc_hier2_lev0.cpp:7:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from c212BB_poisson_mc_hier2_lev0.cpp:17:
./c212BB_poisson_mc_hier2_lev0.h:48:16: warning: 'c212BB_poisson_mc_hier2_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
48 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier2_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::init' declared here: different number of parameters (32 vs 38)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c212BB_poisson_mc_hier2_lev0.cpp:17:
./c212BB_poisson_mc_hier2_lev0.h:69:16: warning: 'c212BB_poisson_mc_hier2_lev0::initGlobalSimParams' hides overloaded virtual function [-Woverloaded-virtual]
69 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^
./c2121a_poisson_mc_hier2_lev0.h:77:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initGlobalSimParams' declared here: different number of parameters (3 vs 2)
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^
In file included from c212BB_poisson_mc_hier2_lev0.cpp:17:
./c212BB_poisson_mc_hier2_lev0.h:73:16: warning: 'c212BB_poisson_mc_hier2_lev0::initL2Params' hides overloaded virtual function [-Woverloaded-virtual]
73 | virtual void initL2Params(SEXP pmu_gamma_0,
| ^
./c2121a_poisson_mc_hier2_lev0.h:92:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initL2Params' declared here: different number of parameters (8 vs 10)
92 | virtual void initL2Params(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^
In file included from c212BB_poisson_mc_hier2_lev0.cpp:17:
./c212BB_poisson_mc_hier2_lev0.h:79:16: warning: 'c212BB_poisson_mc_hier2_lev0::initL2Variables' hides overloaded virtual function [-Woverloaded-virtual]
79 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^
./c2121a_poisson_mc_hier2_lev0.h:88:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initL2Variables' declared here: different number of parameters (4 vs 5)
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^
5 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c212BB_poisson_mc_hier2_lev1.cpp -o c212BB_poisson_mc_hier2_lev1.o
In file included from c212BB_poisson_mc_hier2_lev1.cpp:7:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from c212BB_poisson_mc_hier2_lev1.cpp:17:
./c212BB_poisson_mc_hier2_lev0.h:48:16: warning: 'c212BB_poisson_mc_hier2_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
48 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier2_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::init' declared here: different number of parameters (32 vs 38)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c212BB_poisson_mc_hier2_lev1.cpp:17:
./c212BB_poisson_mc_hier2_lev0.h:69:16: warning: 'c212BB_poisson_mc_hier2_lev0::initGlobalSimParams' hides overloaded virtual function [-Woverloaded-virtual]
69 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^
./c2121a_poisson_mc_hier2_lev0.h:77:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initGlobalSimParams' declared here: different number of parameters (3 vs 2)
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^
In file included from c212BB_poisson_mc_hier2_lev1.cpp:17:
./c212BB_poisson_mc_hier2_lev0.h:73:16: warning: 'c212BB_poisson_mc_hier2_lev0::initL2Params' hides overloaded virtual function [-Woverloaded-virtual]
73 | virtual void initL2Params(SEXP pmu_gamma_0,
| ^
./c2121a_poisson_mc_hier2_lev0.h:92:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initL2Params' declared here: different number of parameters (8 vs 10)
92 | virtual void initL2Params(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^
In file included from c212BB_poisson_mc_hier2_lev1.cpp:17:
./c212BB_poisson_mc_hier2_lev0.h:79:16: warning: 'c212BB_poisson_mc_hier2_lev0::initL2Variables' hides overloaded virtual function [-Woverloaded-virtual]
79 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^
./c2121a_poisson_mc_hier2_lev0.h:88:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initL2Variables' declared here: different number of parameters (4 vs 5)
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^
In file included from c212BB_poisson_mc_hier2_lev1.cpp:18:
./c212BB_poisson_mc_hier2_lev1.h:61:16: warning: 'c212BB_poisson_mc_hier2_lev1::getL2Samples' hides overloaded virtual function [-Woverloaded-virtual]
61 | virtual SEXP getL2Samples(double*** &data);
| ^
./c2121a_poisson_mc_hier2_lev0.h:114:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::getL2Samples' declared here: type mismatch at 1st parameter ('double ****&' vs 'double ***&')
114 | virtual SEXP getL2Samples(double**** &data);
| ^
6 warnings generated.
In file included from c212BB.cpp:7:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from c212BB.cpp:16:
./c212BB.h:129:8: warning: 'c212BB::init' hides overloaded virtual function [-Woverloaded-virtual]
129 | void init(SEXP pChains, SEXP pBurnin, SEXP pIter, SEXP pNumBodySys,
| ^
./c2121a.h:60:16: note: hidden overloaded virtual function 'c2121a::init' declared here: different number of parameters (36 vs 47)
60 | virtual void init(SEXP Chains, SEXP pBurnin, SEXP pIter, SEXP pNumBodySys,
| ^
In file included from c212BB.cpp:16:
./c212BB.h:149:8: warning: 'c212BB::init' hides overloaded virtual function [-Woverloaded-virtual]
149 | void init(int pChains, int pBurnin, int pIter, int pNumBodySys,
| ^
./c2121a.h:60:16: note: hidden overloaded virtual function 'c2121a::init' declared here: different number of parameters (36 vs 46)
60 | virtual void init(SEXP Chains, SEXP pBurnin, SEXP pIter, SEXP pNumBodySys,
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c212BB_poisson_mc_hier3_lev0.cpp -o c212BB_poisson_mc_hier3_lev0.o
3 warnings generated.
In file included from c212BB_poisson_mc_hier3_lev0.cpp:7:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from c212BB_poisson_mc_hier3_lev0.cpp:17:
./c2121a_poisson_mc_hier3_lev0.h:52:16: warning: 'c2121a_poisson_mc_hier3_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier2_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::init' declared here: different number of parameters (32 vs 40)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c212BB_poisson_mc_hier3_lev0.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:57:16: warning: 'c212BB_poisson_mc_hier3_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier3_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::init' declared here: different number of parameters (40 vs 48)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c212BB_poisson_mc_hier3_lev0.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:83:16: warning: 'c212BB_poisson_mc_hier3_lev0::initGlobalSimParams' hides overloaded virtual function [-Woverloaded-virtual]
83 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^
./c2121a_poisson_mc_hier2_lev0.h:77:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initGlobalSimParams' declared here: different number of parameters (3 vs 2)
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^
In file included from c212BB_poisson_mc_hier3_lev0.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:92:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL3Params' hides overloaded virtual function [-Woverloaded-virtual]
92 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^
./c2121a_poisson_mc_hier3_lev0.h:77:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::initL3Params' declared here: different number of parameters (12 vs 14)
77 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^
In file included from c212BB_poisson_mc_hier3_lev0.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:100:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL3Variables' hides overloaded virtual function [-Woverloaded-virtual]
100 | virtual void initL3Variables(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^
./c2121a_poisson_mc_hier3_lev0.h:84:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::initL3Variables' declared here: different number of parameters (4 vs 6)
84 | virtual void initL3Variables(SEXP pmu_gamma_0,
| ^
In file included from c212BB_poisson_mc_hier3_lev0.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:108:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL2Variables' hides overloaded virtual function [-Woverloaded-virtual]
108 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta, SEXP psigma2_gamma, SEXP psigma2_theta, SEXP pPi);
| ^
./c2121a_poisson_mc_hier2_lev0.h:88:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initL2Variables' declared here: different number of parameters (4 vs 5)
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^
7 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c212BB_poisson_mc_hier3_lev1.cpp -o c212BB_poisson_mc_hier3_lev1.o
In file included from c212BB_poisson_mc_hier3_lev1.cpp:7:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from c212BB_poisson_mc_hier3_lev1.cpp:17:
./c2121a_poisson_mc_hier3_lev0.h:52:16: warning: 'c2121a_poisson_mc_hier3_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier2_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::init' declared here: different number of parameters (32 vs 40)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c212BB_poisson_mc_hier3_lev1.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:57:16: warning: 'c212BB_poisson_mc_hier3_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier3_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::init' declared here: different number of parameters (40 vs 48)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c212BB_poisson_mc_hier3_lev1.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:83:16: warning: 'c212BB_poisson_mc_hier3_lev0::initGlobalSimParams' hides overloaded virtual function [-Woverloaded-virtual]
83 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^
./c2121a_poisson_mc_hier2_lev0.h:77:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initGlobalSimParams' declared here: different number of parameters (3 vs 2)
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^
In file included from c212BB_poisson_mc_hier3_lev1.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:92:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL3Params' hides overloaded virtual function [-Woverloaded-virtual]
92 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^
./c2121a_poisson_mc_hier3_lev0.h:77:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::initL3Params' declared here: different number of parameters (12 vs 14)
77 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^
In file included from c212BB_poisson_mc_hier3_lev1.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:100:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL3Variables' hides overloaded virtual function [-Woverloaded-virtual]
100 | virtual void initL3Variables(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^
./c2121a_poisson_mc_hier3_lev0.h:84:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::initL3Variables' declared here: different number of parameters (4 vs 6)
84 | virtual void initL3Variables(SEXP pmu_gamma_0,
| ^
In file included from c212BB_poisson_mc_hier3_lev1.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:108:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL2Variables' hides overloaded virtual function [-Woverloaded-virtual]
108 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta, SEXP psigma2_gamma, SEXP psigma2_theta, SEXP pPi);
| ^
./c2121a_poisson_mc_hier2_lev0.h:88:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initL2Variables' declared here: different number of parameters (4 vs 5)
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^
In file included from c212BB_poisson_mc_hier3_lev1.cpp:19:
./c212BB_poisson_mc_hier3_lev2.h:52:18: warning: 'c212BB_poisson_mc_hier3_lev2::log_f_beta_pi' hides overloaded virtual function [-Woverloaded-virtual]
52 | virtual double log_f_beta_pi(int c, double alpha);
| ^
./c212BB_poisson_mc_hier3_lev0.h:44:18: note: hidden overloaded virtual function 'c212BB_poisson_mc_hier3_lev0::log_f_beta_pi' declared here: different number of parameters (3 vs 2)
44 | virtual double log_f_beta_pi(int c, int l, double alpha);
| ^
In file included from c212BB_poisson_mc_hier3_lev1.cpp:19:
./c212BB_poisson_mc_hier3_lev2.h:71:16: warning: 'c212BB_poisson_mc_hier3_lev2::getL3Samples' hides overloaded virtual function [-Woverloaded-virtual]
71 | virtual SEXP getL3Samples(double** &data);
| ^
./c2121a_poisson_mc_hier3_lev0.h:93:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::getL3Samples' declared here: type mismatch at 1st parameter ('double ***&' vs 'double **&')
93 | virtual SEXP getL3Samples(double*** &data);
| ^
In file included from c212BB_poisson_mc_hier3_lev1.cpp:19:
./c212BB_poisson_mc_hier3_lev2.h:72:16: warning: 'c212BB_poisson_mc_hier3_lev2::getL3Accept' hides overloaded virtual function [-Woverloaded-virtual]
72 | virtual SEXP getL3Accept(int* &data);
| ^
./c212BB_poisson_mc_hier3_lev0.h:113:16: note: hidden overloaded virtual function 'c212BB_poisson_mc_hier3_lev0::getL3Accept' declared here: type mismatch at 1st parameter ('int **&' vs 'int *&')
113 | virtual SEXP getL3Accept(int** &data);
| ^
In file included from c212BB_poisson_mc_hier3_lev1.cpp:20:
./c212BB_poisson_mc_hier3_lev1.h:74:16: warning: 'c212BB_poisson_mc_hier3_lev1::getL2Samples' hides overloaded virtual function [-Woverloaded-virtual]
74 | virtual SEXP getL2Samples(double*** &data);
| ^
./c2121a_poisson_mc_hier2_lev0.h:114:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::getL2Samples' declared here: type mismatch at 1st parameter ('double ****&' vs 'double ***&')
114 | virtual SEXP getL2Samples(double**** &data);
| ^
11 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c212BB_poisson_mc_hier3_lev2.cpp -o c212BB_poisson_mc_hier3_lev2.o
In file included from c212BB_poisson_mc_hier3_lev2.cpp:7:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from c212BB_poisson_mc_hier3_lev2.cpp:17:
./c2121a_poisson_mc_hier3_lev0.h:52:16: warning: 'c2121a_poisson_mc_hier3_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier2_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::init' declared here: different number of parameters (32 vs 40)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c212BB_poisson_mc_hier3_lev2.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:57:16: warning: 'c212BB_poisson_mc_hier3_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier3_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::init' declared here: different number of parameters (40 vs 48)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c212BB_poisson_mc_hier3_lev2.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:83:16: warning: 'c212BB_poisson_mc_hier3_lev0::initGlobalSimParams' hides overloaded virtual function [-Woverloaded-virtual]
83 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^
./c2121a_poisson_mc_hier2_lev0.h:77:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initGlobalSimParams' declared here: different number of parameters (3 vs 2)
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^
In file included from c212BB_poisson_mc_hier3_lev2.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:92:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL3Params' hides overloaded virtual function [-Woverloaded-virtual]
92 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^
./c2121a_poisson_mc_hier3_lev0.h:77:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::initL3Params' declared here: different number of parameters (12 vs 14)
77 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^
In file included from c212BB_poisson_mc_hier3_lev2.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:100:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL3Variables' hides overloaded virtual function [-Woverloaded-virtual]
100 | virtual void initL3Variables(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^
./c2121a_poisson_mc_hier3_lev0.h:84:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::initL3Variables' declared here: different number of parameters (4 vs 6)
84 | virtual void initL3Variables(SEXP pmu_gamma_0,
| ^
In file included from c212BB_poisson_mc_hier3_lev2.cpp:18:
./c212BB_poisson_mc_hier3_lev0.h:108:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL2Variables' hides overloaded virtual function [-Woverloaded-virtual]
108 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta, SEXP psigma2_gamma, SEXP psigma2_theta, SEXP pPi);
| ^
./c2121a_poisson_mc_hier2_lev0.h:88:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initL2Variables' declared here: different number of parameters (4 vs 5)
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^
In file included from c212BB_poisson_mc_hier3_lev2.cpp:19:
./c212BB_poisson_mc_hier3_lev2.h:52:18: warning: 'c212BB_poisson_mc_hier3_lev2::log_f_beta_pi' hides overloaded virtual function [-Woverloaded-virtual]
52 | virtual double log_f_beta_pi(int c, double alpha);
| ^
./c212BB_poisson_mc_hier3_lev0.h:44:18: note: hidden overloaded virtual function 'c212BB_poisson_mc_hier3_lev0::log_f_beta_pi' declared here: different number of parameters (3 vs 2)
44 | virtual double log_f_beta_pi(int c, int l, double alpha);
| ^
In file included from c212BB_poisson_mc_hier3_lev2.cpp:19:
./c212BB_poisson_mc_hier3_lev2.h:71:16: warning: 'c212BB_poisson_mc_hier3_lev2::getL3Samples' hides overloaded virtual function [-Woverloaded-virtual]
71 | virtual SEXP getL3Samples(double** &data);
| ^
./c2121a_poisson_mc_hier3_lev0.h:93:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::getL3Samples' declared here: type mismatch at 1st parameter ('double ***&' vs 'double **&')
93 | virtual SEXP getL3Samples(double*** &data);
| ^
In file included from c212BB_poisson_mc_hier3_lev2.cpp:19:
./c212BB_poisson_mc_hier3_lev2.h:72:16: warning: 'c212BB_poisson_mc_hier3_lev2::getL3Accept' hides overloaded virtual function [-Woverloaded-virtual]
72 | virtual SEXP getL3Accept(int* &data);
| ^
./c212BB_poisson_mc_hier3_lev0.h:113:16: note: hidden overloaded virtual function 'c212BB_poisson_mc_hier3_lev0::getL3Accept' declared here: type mismatch at 1st parameter ('int **&' vs 'int *&')
113 | virtual SEXP getL3Accept(int** &data);
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c c212_exec.cpp -o c212_exec.o
10 warnings generated.
In file included from c212_exec.cpp:6:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from c212_exec.cpp:16:
./c212BB.h:129:8: warning: 'c212BB::init' hides overloaded virtual function [-Woverloaded-virtual]
129 | void init(SEXP pChains, SEXP pBurnin, SEXP pIter, SEXP pNumBodySys,
| ^
./c2121a.h:60:16: note: hidden overloaded virtual function 'c2121a::init' declared here: different number of parameters (36 vs 47)
60 | virtual void init(SEXP Chains, SEXP pBurnin, SEXP pIter, SEXP pNumBodySys,
| ^
In file included from c212_exec.cpp:16:
./c212BB.h:149:8: warning: 'c212BB::init' hides overloaded virtual function [-Woverloaded-virtual]
149 | void init(int pChains, int pBurnin, int pIter, int pNumBodySys,
| ^
./c2121a.h:60:16: note: hidden overloaded virtual function 'c2121a::init' declared here: different number of parameters (36 vs 46)
60 | virtual void init(SEXP Chains, SEXP pBurnin, SEXP pIter, SEXP pNumBodySys,
| ^
In file included from c212_exec.cpp:18:
./c2121a_poisson_mc_hier2_lev1.h:53:16: warning: 'c2121a_poisson_mc_hier2_lev1::getL2Samples' hides overloaded virtual function [-Woverloaded-virtual]
53 | virtual SEXP getL2Samples(double*** &data);
| ^
./c2121a_poisson_mc_hier2_lev0.h:114:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::getL2Samples' declared here: type mismatch at 1st parameter ('double ****&' vs 'double ***&')
114 | virtual SEXP getL2Samples(double**** &data);
| ^
In file included from c212_exec.cpp:19:
./c212BB_poisson_mc_hier2_lev0.h:48:16: warning: 'c212BB_poisson_mc_hier2_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
48 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier2_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::init' declared here: different number of parameters (32 vs 38)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c212_exec.cpp:19:
./c212BB_poisson_mc_hier2_lev0.h:69:16: warning: 'c212BB_poisson_mc_hier2_lev0::initGlobalSimParams' hides overloaded virtual function [-Woverloaded-virtual]
69 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^
./c2121a_poisson_mc_hier2_lev0.h:77:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initGlobalSimParams' declared here: different number of parameters (3 vs 2)
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^
In file included from c212_exec.cpp:19:
./c212BB_poisson_mc_hier2_lev0.h:73:16: warning: 'c212BB_poisson_mc_hier2_lev0::initL2Params' hides overloaded virtual function [-Woverloaded-virtual]
73 | virtual void initL2Params(SEXP pmu_gamma_0,
| ^
./c2121a_poisson_mc_hier2_lev0.h:92:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initL2Params' declared here: different number of parameters (8 vs 10)
92 | virtual void initL2Params(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^
In file included from c212_exec.cpp:19:
./c212BB_poisson_mc_hier2_lev0.h:79:16: warning: 'c212BB_poisson_mc_hier2_lev0::initL2Variables' hides overloaded virtual function [-Woverloaded-virtual]
79 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^
./c2121a_poisson_mc_hier2_lev0.h:88:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initL2Variables' declared here: different number of parameters (4 vs 5)
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^
In file included from c212_exec.cpp:20:
./c212BB_poisson_mc_hier2_lev1.h:61:16: warning: 'c212BB_poisson_mc_hier2_lev1::getL2Samples' hides overloaded virtual function [-Woverloaded-virtual]
61 | virtual SEXP getL2Samples(double*** &data);
| ^
./c2121a_poisson_mc_hier2_lev0.h:114:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::getL2Samples' declared here: type mismatch at 1st parameter ('double ****&' vs 'double ***&')
114 | virtual SEXP getL2Samples(double**** &data);
| ^
In file included from c212_exec.cpp:21:
./c2121a_poisson_mc_hier3_lev0.h:52:16: warning: 'c2121a_poisson_mc_hier3_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier2_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::init' declared here: different number of parameters (32 vs 40)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c212_exec.cpp:22:
./c2121a_poisson_mc_hier3_lev2.h:53:16: warning: 'c2121a_poisson_mc_hier3_lev2::getL3Samples' hides overloaded virtual function [-Woverloaded-virtual]
53 | virtual SEXP getL3Samples(double** &data);
| ^
./c2121a_poisson_mc_hier3_lev0.h:93:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::getL3Samples' declared here: type mismatch at 1st parameter ('double ***&' vs 'double **&')
93 | virtual SEXP getL3Samples(double*** &data);
| ^
In file included from c212_exec.cpp:23:
./c2121a_poisson_mc_hier3_lev1.h:58:16: warning: 'c2121a_poisson_mc_hier3_lev1::getL2Samples' hides overloaded virtual function [-Woverloaded-virtual]
58 | virtual SEXP getL2Samples(double*** &data);
| ^
./c2121a_poisson_mc_hier2_lev0.h:114:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::getL2Samples' declared here: type mismatch at 1st parameter ('double ****&' vs 'double ***&')
114 | virtual SEXP getL2Samples(double**** &data);
| ^
In file included from c212_exec.cpp:24:
./c212BB_poisson_mc_hier3_lev0.h:57:16: warning: 'c212BB_poisson_mc_hier3_lev0::init' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
./c2121a_poisson_mc_hier3_lev0.h:52:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::init' declared here: different number of parameters (40 vs 48)
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^
In file included from c212_exec.cpp:24:
./c212BB_poisson_mc_hier3_lev0.h:83:16: warning: 'c212BB_poisson_mc_hier3_lev0::initGlobalSimParams' hides overloaded virtual function [-Woverloaded-virtual]
83 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^
./c2121a_poisson_mc_hier2_lev0.h:77:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initGlobalSimParams' declared here: different number of parameters (3 vs 2)
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^
In file included from c212_exec.cpp:24:
./c212BB_poisson_mc_hier3_lev0.h:92:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL3Params' hides overloaded virtual function [-Woverloaded-virtual]
92 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^
./c2121a_poisson_mc_hier3_lev0.h:77:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::initL3Params' declared here: different number of parameters (12 vs 14)
77 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^
In file included from c212_exec.cpp:24:
./c212BB_poisson_mc_hier3_lev0.h:100:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL3Variables' hides overloaded virtual function [-Woverloaded-virtual]
100 | virtual void initL3Variables(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^
./c2121a_poisson_mc_hier3_lev0.h:84:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::initL3Variables' declared here: different number of parameters (4 vs 6)
84 | virtual void initL3Variables(SEXP pmu_gamma_0,
| ^
In file included from c212_exec.cpp:24:
./c212BB_poisson_mc_hier3_lev0.h:108:16: warning: 'c212BB_poisson_mc_hier3_lev0::initL2Variables' hides overloaded virtual function [-Woverloaded-virtual]
108 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta, SEXP psigma2_gamma, SEXP psigma2_theta, SEXP pPi);
| ^
./c2121a_poisson_mc_hier2_lev0.h:88:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::initL2Variables' declared here: different number of parameters (4 vs 5)
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^
In file included from c212_exec.cpp:25:
./c212BB_poisson_mc_hier3_lev2.h:52:18: warning: 'c212BB_poisson_mc_hier3_lev2::log_f_beta_pi' hides overloaded virtual function [-Woverloaded-virtual]
52 | virtual double log_f_beta_pi(int c, double alpha);
| ^
./c212BB_poisson_mc_hier3_lev0.h:44:18: note: hidden overloaded virtual function 'c212BB_poisson_mc_hier3_lev0::log_f_beta_pi' declared here: different number of parameters (3 vs 2)
44 | virtual double log_f_beta_pi(int c, int l, double alpha);
| ^
In file included from c212_exec.cpp:25:
./c212BB_poisson_mc_hier3_lev2.h:71:16: warning: 'c212BB_poisson_mc_hier3_lev2::getL3Samples' hides overloaded virtual function [-Woverloaded-virtual]
71 | virtual SEXP getL3Samples(double** &data);
| ^
./c2121a_poisson_mc_hier3_lev0.h:93:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier3_lev0::getL3Samples' declared here: type mismatch at 1st parameter ('double ***&' vs 'double **&')
93 | virtual SEXP getL3Samples(double*** &data);
| ^
In file included from c212_exec.cpp:25:
./c212BB_poisson_mc_hier3_lev2.h:72:16: warning: 'c212BB_poisson_mc_hier3_lev2::getL3Accept' hides overloaded virtual function [-Woverloaded-virtual]
72 | virtual SEXP getL3Accept(int* &data);
| ^
./c212BB_poisson_mc_hier3_lev0.h:113:16: note: hidden overloaded virtual function 'c212BB_poisson_mc_hier3_lev0::getL3Accept' declared here: type mismatch at 1st parameter ('int **&' vs 'int *&')
113 | virtual SEXP getL3Accept(int** &data);
| ^
In file included from c212_exec.cpp:26:
./c212BB_poisson_mc_hier3_lev1.h:74:16: warning: 'c212BB_poisson_mc_hier3_lev1::getL2Samples' hides overloaded virtual function [-Woverloaded-virtual]
74 | virtual SEXP getL2Samples(double*** &data);
| ^
./c2121a_poisson_mc_hier2_lev0.h:114:16: note: hidden overloaded virtual function 'c2121a_poisson_mc_hier2_lev0::getL2Samples' declared here: type mismatch at 1st parameter ('double ****&' vs 'double ***&')
114 | virtual SEXP getL2Samples(double**** &data);
| ^
21 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c register.cpp -o register.o
In file included from register.cpp:4:
./c212_Rdefines.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o c212.so c2121a.o c2121a_poisson_mc_hier2_lev0.o c2121a_poisson_mc_hier2_lev1.o c2121a_poisson_mc_hier3_lev0.o c2121a_poisson_mc_hier3_lev1.o c2121a_poisson_mc_hier3_lev2.o c212BB.o c212BB_poisson_mc_hier2_lev0.o c212BB_poisson_mc_hier2_lev1.o c212BB_poisson_mc_hier3_lev0.o c212BB_poisson_mc_hier3_lev1.o c212BB_poisson_mc_hier3_lev2.o c212_exec.o register.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/c212/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/c212/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/c212/src'
installing to /data/gannet/ripley/R/packages/tests-clang/c212.Rcheck/00LOCK-c212/00new/c212/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (c212)