• using R Under development (unstable) (2024-12-13 r87441)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 19.1.5     flang-new version 19.1.5
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘bootCT/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘bootCT’ version ‘2.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘bootCT’ can be installed ... [57s/90s] OK See the install log for details.
• used C++ compiler: ‘clang version 19.1.5’
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [21s/25s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [30m/31m] ERROR Error(s) in re-building vignettes: --- re-building ‘bootCTvignette.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/bootCT.Rcheck/vign_test/bootCT/vignettes/bootCTvignette_files/figure-html/unnamed-chunk-9-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 71454 bytes Input file size = 71628 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70393   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 69837   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 69837 Output IDAT size = 69837 bytes (1617 bytes decrease) Output file size = 69915 bytes (1713 bytes = 2.39% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/bootCT.Rcheck/vign_test/bootCT/vignettes/bootCTvignette_files/figure-html/unnamed-chunk-9-2.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 68792 bytes Input file size = 68966 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 67422   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 67399   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 67399 Output IDAT size = 67399 bytes (1393 bytes decrease) Output file size = 67477 bytes (1489 bytes = 2.16% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/bootCT.Rcheck/vign_test/bootCT/vignettes/bootCTvignette_files/figure-html/unnamed-chunk-11-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28399 bytes Input file size = 28513 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24016   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24016 Output IDAT size = 24016 bytes (4383 bytes decrease) Output file size = 24094 bytes (4419 bytes = 15.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/bootCT.Rcheck/vign_test/bootCT/vignettes/bootCTvignette_files/figure-html/unnamed-chunk-11-2.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 42613 bytes Input file size = 42751 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36894   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36894 Output IDAT size = 36894 bytes (5719 bytes decrease) Output file size = 36972 bytes (5779 bytes = 13.52% decrease)
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR