* installing *source* package ‘blockcluster’ ... ** package ‘blockcluster’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 19.1.5’ using C++ compiler: ‘clang version 19.1.5’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/blockcluster/src' /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init_blockcluster.c -o init_blockcluster.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Algorithms/CEMAlgo.cpp -o coclust/src/Algorithms/CEMAlgo.o In file included from coclust/src/Algorithms/CEMAlgo.cpp:31: In file included from coclust/src/Algorithms/CEMAlgo.h:35: In file included from coclust/src/Algorithms/IAlgo.h:33: In file included from coclust/src/Algorithms/../Models/ICoClustModel.h:34: In file included from coclust/src/Algorithms/../Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Algorithms/../Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Algorithms/EMAlgo.cpp -o coclust/src/Algorithms/EMAlgo.o In file included from coclust/src/Algorithms/EMAlgo.cpp:31: In file included from coclust/src/Algorithms/EMAlgo.h:35: In file included from coclust/src/Algorithms/IAlgo.h:33: In file included from coclust/src/Algorithms/../Models/ICoClustModel.h:34: In file included from coclust/src/Algorithms/../Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Algorithms/../Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Algorithms/GibbsAlgo.cpp -o coclust/src/Algorithms/GibbsAlgo.o In file included from coclust/src/Algorithms/GibbsAlgo.cpp:31: In file included from coclust/src/Algorithms/GibbsAlgo.h:34: In file included from coclust/src/Algorithms/IAlgo.h:33: In file included from coclust/src/Algorithms/../Models/ICoClustModel.h:34: In file included from coclust/src/Algorithms/../Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Algorithms/../Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Algorithms/SEMAlgo.cpp -o coclust/src/Algorithms/SEMAlgo.o In file included from coclust/src/Algorithms/SEMAlgo.cpp:31: In file included from coclust/src/Algorithms/SEMAlgo.h:34: In file included from coclust/src/Algorithms/IAlgo.h:33: In file included from coclust/src/Algorithms/../Models/ICoClustModel.h:34: In file included from coclust/src/Algorithms/../Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Algorithms/../Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/CoClustFacade/CoCluster.cpp -o coclust/src/CoClustFacade/CoCluster.o In file included from coclust/src/CoClustFacade/CoCluster.cpp:30: In file included from coclust/src/CoClustFacade/CoCluster.h:32: In file included from coclust/src/CoClustFacade/../Strategy/IStrategy.h:33: In file included from coclust/src/CoClustFacade/../Strategy/../Models/ICoClustModel.h:34: In file included from coclust/src/CoClustFacade/../Strategy/../Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/CoClustFacade/../Strategy/../Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Strategy/XStrategyAlgo.cpp -o coclust/src/Strategy/XStrategyAlgo.o In file included from coclust/src/Strategy/XStrategyAlgo.cpp:32: In file included from coclust/src/Strategy/XStrategyAlgo.h:36: In file included from coclust/src/Strategy/IStrategy.h:33: In file included from coclust/src/Strategy/../Models/ICoClustModel.h:34: In file included from coclust/src/Strategy/../Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Strategy/../Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Strategy/XStrategyforSEMAlgo.cpp -o coclust/src/Strategy/XStrategyforSEMAlgo.o In file included from coclust/src/Strategy/XStrategyforSEMAlgo.cpp:32: In file included from coclust/src/Strategy/XStrategyforSEMAlgo.h:34: In file included from coclust/src/Strategy/IStrategy.h:33: In file included from coclust/src/Strategy/../Models/ICoClustModel.h:34: In file included from coclust/src/Strategy/../Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Strategy/../Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/InputParameters/InputParameters.cpp -o coclust/src/InputParameters/InputParameters.o In file included from coclust/src/InputParameters/InputParameters.cpp:30: In file included from coclust/src/InputParameters/../Models/ICoClustModel.h:34: In file included from coclust/src/InputParameters/../Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/InputParameters/../Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Models/BinaryLBModel.cpp -o coclust/src/Models/BinaryLBModel.o In file included from coclust/src/Models/BinaryLBModel.cpp:33: In file included from coclust/src/Models/BinaryLBModel.h:39: In file included from coclust/src/Models/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Models/BinaryLBModelequalepsilon.cpp -o coclust/src/Models/BinaryLBModelequalepsilon.o In file included from coclust/src/Models/BinaryLBModelequalepsilon.cpp:30: In file included from coclust/src/Models/BinaryLBModelequalepsilon.h:38: In file included from coclust/src/Models/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Models/CategoricalLBModel.cpp -o coclust/src/Models/CategoricalLBModel.o In file included from coclust/src/Models/CategoricalLBModel.cpp:26: In file included from coclust/src/Models/CategoricalLBModel.h:31: In file included from coclust/src/Models/ICoClustModel.h:34: In file included from coclust/src/Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Models/ContingencyLBModel.cpp -o coclust/src/Models/ContingencyLBModel.o In file included from coclust/src/Models/ContingencyLBModel.cpp:29: In file included from coclust/src/Models/ContingencyLBModel.h:36: In file included from coclust/src/Models/ICoClustModel.h:34: In file included from coclust/src/Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Models/ContingencyLBModel_mu_i_nu_j.cpp -o coclust/src/Models/ContingencyLBModel_mu_i_nu_j.o In file included from coclust/src/Models/ContingencyLBModel_mu_i_nu_j.cpp:30: In file included from coclust/src/Models/ContingencyLBModel_mu_i_nu_j.h:37: In file included from coclust/src/Models/ICoClustModel.h:34: In file included from coclust/src/Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Models/ContinuousLBModel.cpp -o coclust/src/Models/ContinuousLBModel.o In file included from coclust/src/Models/ContinuousLBModel.cpp:30: In file included from coclust/src/Models/ContinuousLBModel.h:33: In file included from coclust/src/Models/ICoClustModel.h:34: In file included from coclust/src/Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Models/ContinuousLBModelequalsigma.cpp -o coclust/src/Models/ContinuousLBModelequalsigma.o In file included from coclust/src/Models/ContinuousLBModelequalsigma.cpp:29: In file included from coclust/src/Models/ContinuousLBModelequalsigma.h:36: In file included from coclust/src/Models/ICoClustModel.h:34: In file included from coclust/src/Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c coclust/src/Models/ICoClustModel.cpp -o coclust/src/Models/ICoClustModel.o In file included from coclust/src/Models/ICoClustModel.cpp:31: In file included from coclust/src/Models/ICoClustModel.h:34: In file included from coclust/src/Models/../InputParameters/InputParameters.h:32: In file included from coclust/src/Models/../InputParameters/../typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c BinaryDataExchange.cpp -o BinaryDataExchange.o In file included from BinaryDataExchange.cpp:36: In file included from ./BinaryDataExchange.h:42: In file included from ./IDataExchange.h:41: In file included from ./coclust/src/typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c CategoricalDataExchange.cpp -o CategoricalDataExchange.o In file included from CategoricalDataExchange.cpp:1: In file included from ./CategoricalDataExchange.h:6: In file included from ./IDataExchange.h:41: In file included from ./coclust/src/typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c ContingencyDataExchange.cpp -o ContingencyDataExchange.o In file included from ContingencyDataExchange.cpp:36: In file included from ./ContingencyDataExchange.h:42: In file included from ./IDataExchange.h:41: In file included from ./coclust/src/typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c ContinuousDataExchange.cpp -o ContinuousDataExchange.o In file included from ContinuousDataExchange.cpp:36: In file included from ./ContinuousDataExchange.h:42: In file included from ./IDataExchange.h:41: In file included from ./coclust/src/typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c IDataExchange.cpp -o IDataExchange.o In file included from IDataExchange.cpp:39: In file included from ./IDataExchange.h:41: In file included from ./coclust/src/typedefs/typedef.h:37: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DRPACKAGE `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CppFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/rtkore/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include `/data/gannet/ripley/R/R-clang/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Rcoclustmain.cpp -o Rcoclustmain.o In file included from Rcoclustmain.cpp:36: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/RTKpp.h:41: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/STKpp.h:156: In file included from /data/gannet/ripley/R/test-clang/rtkore/include/Arrays.h:107: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/Arrays/include/STK_Display.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ExportToCsv.h:39: In file included from /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_ReadWriteCsv.h:44: /data/gannet/ripley/R/test-clang/rtkore/projects/DManager/include/STK_Variable.h:237:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] 237 | { int code = baseIdx; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o blockcluster.so init_blockcluster.o coclust/src/Algorithms/CEMAlgo.o coclust/src/Algorithms/EMAlgo.o coclust/src/Algorithms/GibbsAlgo.o coclust/src/Algorithms/SEMAlgo.o coclust/src/CoClustFacade/CoCluster.o coclust/src/Strategy/XStrategyAlgo.o coclust/src/Strategy/XStrategyforSEMAlgo.o coclust/src/InputParameters/InputParameters.o coclust/src/Models/BinaryLBModel.o coclust/src/Models/BinaryLBModelequalepsilon.o coclust/src/Models/CategoricalLBModel.o coclust/src/Models/ContingencyLBModel.o coclust/src/Models/ContingencyLBModel_mu_i_nu_j.o coclust/src/Models/ContinuousLBModel.o coclust/src/Models/ContinuousLBModelequalsigma.o coclust/src/Models/ICoClustModel.o BinaryDataExchange.o CategoricalDataExchange.o ContingencyDataExchange.o ContinuousDataExchange.o IDataExchange.o Rcoclustmain.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/blockcluster/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/blockcluster/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/blockcluster/src' installing to /data/gannet/ripley/R/packages/tests-clang/blockcluster.Rcheck/00LOCK-blockcluster/00new/blockcluster/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (blockcluster)