- using R Under development (unstable) (2025-02-15 r87725)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 19.1.7
flang-new version 19.1.7
- running under: Fedora Linux 40 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘blme/DESCRIPTION’ ... OK
- this is package ‘blme’ version ‘1.0-6’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘blme’ can be installed ... [21s/51s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s/11s] OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... [4s/10s] OK
- checking whether the namespace can be loaded with stated dependencies ... [4s/10s] OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [30s/68s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [6s/14s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [43s/67s] ERROR
Running ‘test-all.R’ [43s/66s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> if (require(testthat, quietly = TRUE)) {
+ test_check("blme")
+ } else {
+ cat("package 'testthat' not available; cannot run unit tests\n")
+ }
Loading required package: blme
Loading required package: lme4
Loading required package: Matrix
[ FAIL 2 | WARN 15 | SKIP 0 | PASS 109 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-06-lmm_resid.R:20:3'): blmer fits the eight schools example correctly ──
eightSchools@theta not equal to 0.
1/1 mismatches
[1] 1 - 0 == 1
── Error ('test-07-lmm_fixef.R:120:3'): blmer fits sleep study example in documentation ──
Error in `optwrap(optimizer, devfun, startingValues, lower = lowerBounds,
control = control, adj = FALSE, verbose = verbose, ...)`: (converted from warning) convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Backtrace:
▆
1. └─blme::blmer(...) at test-07-lmm_fixef.R:120:3
2. └─blme:::optimizeLmer(...)
3. └─lme4:::optwrap(...)
[ FAIL 2 | WARN 15 | SKIP 0 | PASS 109 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [7s/12s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR