* installing *source* package ‘bigtabulate’ ...
** package ‘bigtabulate’ successfully unpacked and MD5 sums checked
** using staged installation
checking for Sun Studio compiler...
no
checking for OS...
Linux
** libs
using C compiler: ‘clang version 19.1.6’
using C++ compiler: ‘clang version 19.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bigtabulate/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DLINUX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c bigtabulate.cpp -o bigtabulate.o
In file included from bigtabulate.cpp:7:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/shared_ptr.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/data/gannet/ripley/R/test-clang/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'BreakMapper<double>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<BreakMapper<double>>' requested here
150 | boost::checked_delete( p );
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<BreakMapper<double>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<double>, BreakMapper<double>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bigtabulate.cpp:438:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<double>>::shared_ptr<BreakMapper<double>>' requested here
438 | mappers.push_back( MapperPtr(
| ^
bigtabulate.cpp:772:10: note: in instantiation of function template specialization 'TAPPLY<double, MatrixAccessor<double>>' requested here
772 | return TAPPLY<double>( MatrixAccessor<double>( REAL(numericMatrix),
| ^
In file included from bigtabulate.cpp:7:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/shared_ptr.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/data/gannet/ripley/R/test-clang/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'IndexMapper<double>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<IndexMapper<double>>' requested here
150 | boost::checked_delete( p );
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<IndexMapper<double>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<double>, IndexMapper<double>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bigtabulate.cpp:445:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<double>>::shared_ptr<IndexMapper<double>>' requested here
445 | mappers.push_back( MapperPtr(
| ^
bigtabulate.cpp:772:10: note: in instantiation of function template specialization 'TAPPLY<double, MatrixAccessor<double>>' requested here
772 | return TAPPLY<double>( MatrixAccessor<double>( REAL(numericMatrix),
| ^
In file included from bigtabulate.cpp:7:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/shared_ptr.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/data/gannet/ripley/R/test-clang/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'BreakMapper<int>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<BreakMapper<int>>' requested here
150 | boost::checked_delete( p );
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<BreakMapper<int>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<int>, BreakMapper<int>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bigtabulate.cpp:438:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<int>>::shared_ptr<BreakMapper<int>>' requested here
438 | mappers.push_back( MapperPtr(
| ^
bigtabulate.cpp:782:10: note: in instantiation of function template specialization 'TAPPLY<int, MatrixAccessor<int>>' requested here
782 | return TAPPLY<int>( MatrixAccessor<int>( INTEGER(numericMatrix),
| ^
In file included from bigtabulate.cpp:7:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/shared_ptr.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/data/gannet/ripley/R/test-clang/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'IndexMapper<int>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<IndexMapper<int>>' requested here
150 | boost::checked_delete( p );
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<IndexMapper<int>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<int>, IndexMapper<int>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bigtabulate.cpp:445:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<int>>::shared_ptr<IndexMapper<int>>' requested here
445 | mappers.push_back( MapperPtr(
| ^
bigtabulate.cpp:782:10: note: in instantiation of function template specialization 'TAPPLY<int, MatrixAccessor<int>>' requested here
782 | return TAPPLY<int>( MatrixAccessor<int>( INTEGER(numericMatrix),
| ^
4 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DLINUX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bigtabulate_init.c -o bigtabulate_init.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o bigtabulate.so bigtabulate.o bigtabulate_init.o -lrt -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bigtabulate/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bigtabulate/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bigtabulate/src'
installing to /data/gannet/ripley/R/packages/tests-clang/bigtabulate.Rcheck/00LOCK-bigtabulate/00new/bigtabulate/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bigtabulate)