* installing *source* package ‘bage’ ... ** package ‘bage’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.8’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bage/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/TMB/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -DTMBAD_FRAMEWORK -DTMB_EIGEN_DISABLE_WARNINGS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bage.cpp -o bage.o In file included from bage.cpp:3: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from bage.cpp:3: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ "/data/gannet/ripley/R/R-clang/bin/Rscript" -e "cat(as.character(packageVersion('TMB')), '\n', sep="", file='../inst/TMB-version')" "/data/gannet/ripley/R/R-clang/bin/Rscript" -e "cat(as.character(packageVersion('Matrix')), '\n', sep="", file='../inst/Matrix-version')" 3 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o bage.so bage.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bage/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bage/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bage/src' installing to /data/gannet/ripley/R/packages/tests-clang/bage.Rcheck/00LOCK-bage/00new/bage/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bage)