• using R Under development (unstable) (2024-11-09 r87314)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 19.1.3     flang-new version 19.1.3
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘autoCovariateSelection/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘autoCovariateSelection’ version ‘1.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘autoCovariateSelection’ can be installed ... [8s/13s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/17s] OK
• checking Rd files ... NOTE checkRd: (-1) get_candidate_covariates.Rd:50: Lost braces     50 | \item \code{covars_data} {The \code{data.frame} that is filtered out of \code{df} with only the selected \code{covars}}. The values of the        | ^ checkRd: (-1) get_candidate_covariates.Rd:53: Lost braces     53 | \item \code{patientIds} {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}}        | ^ checkRd: (-1) get_prioritised_covariates.Rd:40: Lost braces     40 | \item \code{multiplicative_bias}{The absolute log of the multiplicative bias term for each of the auto-selected prioritised covariates}        | ^ checkRd: (-1) get_recurrence_covariates.Rd:34: Lost braces     34 | \item \code{patientIds} {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [13s/17s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [9s/13s] OK   Running ‘testthat.R’ [8s/12s]
• checking PDF version of manual ... [8s/15s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE