Install log for 'arulesSequences'

* installing *source* package ‘arulesSequences’ ...
** package ‘arulesSequences’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.3’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/arulesSequences/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c arrayIndex.c -o arrayIndex.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c dll.c -o dll.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c idlists.c -o idlists.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c makebin.c -o makebin.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c matrix.c -o matrix.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c ported.c -o ported.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c ptree.c -o ptree.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c similarity.c -o similarity.o
## binaries
( cd TPOSE;  \
  make	CXX="/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17" CXXFLAGS="-O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 "\
	LDFLAGS="-L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64"\
	BINDIR="inst/bin"\
	install-bin \
)
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/arulesSequences/src/TPOSE'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c -o calcdb.o calcdb.cc
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c -o Array.o Array.cc
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o exttpose exttpose.cc calcdb.o Array.o  -lm
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o getconf getconf.cc calcdb.o -lm
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o makebin makebin.cc
mkdir -p ../../inst/bin
cp exttpose getconf makebin ../../inst/bin
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/arulesSequences/src/TPOSE'
( cd cSPADE; \
  make	CXX="/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17" CXXFLAGS="-O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 "\
	LDFLAGS="-L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64"\
	BINDIR="inst/bin"\
	install-bin \
)
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/arulesSequences/src/cSPADE'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c Itemset.cc
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c Array.cc
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c Eqclass.cc
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c Lists.cc
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c extl2.cc
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c partition.cc
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c maxgap.cc
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o spade sequence.cc Itemset.o Array.o Eqclass.o Lists.o extl2.o partition.o maxgap.o  -lm
cp spade ../../inst/bin
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/arulesSequences/src/cSPADE'
# Note that these are now the only ones in use.
../inst/bin/exttpose --version
Zaki TPOSE 2001 (2023)
../inst/bin/spade --version
Zaki cSPADE 2001 (2023)
/usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o arulesSequences.so arrayIndex.o dll.o idlists.o makebin.o matrix.o ported.o ptree.o similarity.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/arulesSequences/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/arulesSequences/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/arulesSequences/src'
installing to /data/gannet/ripley/R/packages/tests-clang/arulesSequences.Rcheck/00LOCK-arulesSequences/00new/arulesSequences/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘itemsets’ in package ‘arulesSequences’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arulesSequences)