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cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/geometrygenerators.cpp.o -MF CMakeFiles/salalib.dir/geometrygenerators.cpp.o.d -o CMakeFiles/salalib.dir/geometrygenerators.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/geometrygenerators.cpp
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cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/point.cpp.o -MF CMakeFiles/salalib.dir/point.cpp.o.d -o CMakeFiles/salalib.dir/point.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/point.cpp
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[ 67%] Building CXX object salalib/CMakeFiles/salalib.dir/shapemapgroupdata.cpp.o
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[ 71%] Building CXX object salalib/CMakeFiles/salalib.dir/genlib/stringutils.cpp.o
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[ 72%] Building CXX object salalib/CMakeFiles/salalib.dir/genlib/xmlparse.cpp.o
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[ 73%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgaisovist.cpp.o
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cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgathroughvision.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgathroughvision.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgathroughvision.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/vgamodules/vgathroughvision.cpp
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cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgavisuallocal.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgavisuallocal.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgavisuallocal.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/vgamodules/vgavisuallocal.cpp
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cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgavisualglobal.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgavisualglobal.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgavisualglobal.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/vgamodules/vgavisualglobal.cpp
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cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgametricdepth.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgametricdepth.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgametricdepth.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/vgamodules/vgametricdepth.cpp
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[ 86%] Building CXX object salalib/CMakeFiles/salalib.dir/axialmodules/axialintegration.cpp.o
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[ 87%] Building CXX object salalib/CMakeFiles/salalib.dir/axialmodules/axiallocal.cpp.o
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[ 87%] Building CXX object salalib/CMakeFiles/salalib.dir/axialmodules/axialstepdepth.cpp.o
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[ 88%] Building CXX object salalib/CMakeFiles/salalib.dir/segmmodules/segmangular.cpp.o
cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/segmmodules/segmangular.cpp.o -MF CMakeFiles/salalib.dir/segmmodules/segmangular.cpp.o.d -o CMakeFiles/salalib.dir/segmmodules/segmangular.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/segmmodules/segmangular.cpp
[ 89%] Building CXX object salalib/CMakeFiles/salalib.dir/segmmodules/segmmetric.cpp.o
cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/segmmodules/segmmetric.cpp.o -MF CMakeFiles/salalib.dir/segmmodules/segmmetric.cpp.o.d -o CMakeFiles/salalib.dir/segmmodules/segmmetric.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/segmmodules/segmmetric.cpp
[ 89%] Building CXX object salalib/CMakeFiles/salalib.dir/segmmodules/segmtopological.cpp.o
cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/segmmodules/segmtopological.cpp.o -MF CMakeFiles/salalib.dir/segmmodules/segmtopological.cpp.o.d -o CMakeFiles/salalib.dir/segmmodules/segmtopological.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/segmmodules/segmtopological.cpp
[ 90%] Building CXX object salalib/CMakeFiles/salalib.dir/segmmodules/segmtulip.cpp.o
cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/segmmodules/segmtulip.cpp.o -MF CMakeFiles/salalib.dir/segmmodules/segmtulip.cpp.o.d -o CMakeFiles/salalib.dir/segmmodules/segmtulip.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/segmmodules/segmtulip.cpp
[ 91%] Building CXX object salalib/CMakeFiles/salalib.dir/segmmodules/segmtopologicalpd.cpp.o
cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/segmmodules/segmtopologicalpd.cpp.o -MF CMakeFiles/salalib.dir/segmmodules/segmtopologicalpd.cpp.o.d -o CMakeFiles/salalib.dir/segmmodules/segmtopologicalpd.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/segmmodules/segmtopologicalpd.cpp
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cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/segmmodules/segmmetricpd.cpp.o -MF CMakeFiles/salalib.dir/segmmodules/segmmetricpd.cpp.o.d -o CMakeFiles/salalib.dir/segmmodules/segmmetricpd.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/segmmodules/segmmetricpd.cpp
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cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/parsers/ntfp.cpp.o -MF CMakeFiles/salalib.dir/parsers/ntfp.cpp.o.d -o CMakeFiles/salalib.dir/parsers/ntfp.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/parsers/ntfp.cpp
[ 95%] Building CXX object salalib/CMakeFiles/salalib.dir/parsers/dxfp.cpp.o
cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/parsers/dxfp.cpp.o -MF CMakeFiles/salalib.dir/parsers/dxfp.cpp.o.d -o CMakeFiles/salalib.dir/parsers/dxfp.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/parsers/dxfp.cpp
[ 96%] Building CXX object salalib/CMakeFiles/salalib.dir/parsers/mapinfodata.cpp.o
cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/parsers/mapinfodata.cpp.o -MF CMakeFiles/salalib.dir/parsers/mapinfodata.cpp.o.d -o CMakeFiles/salalib.dir/parsers/mapinfodata.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/parsers/mapinfodata.cpp
[ 96%] Building CXX object salalib/CMakeFiles/salalib.dir/parsers/tigerp.cpp.o
cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/parsers/tigerp.cpp.o -MF CMakeFiles/salalib.dir/parsers/tigerp.cpp.o.d -o CMakeFiles/salalib.dir/parsers/tigerp.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/parsers/tigerp.cpp
[ 97%] Building CXX object salalib/CMakeFiles/salalib.dir/agents/agent.cpp.o
cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/agents/agent.cpp.o -MF CMakeFiles/salalib.dir/agents/agent.cpp.o.d -o CMakeFiles/salalib.dir/agents/agent.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/agents/agent.cpp
[ 98%] Building CXX object salalib/CMakeFiles/salalib.dir/agents/agentprogram.cpp.o
cd /data/gannet/ripley/R/packages/tests-clang/alcyon/src/build-Release/salalib && /usr/local/clang19/bin/clang++  -stdlib=libc++ -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/. -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/agents/agentprogram.cpp.o -MF CMakeFiles/salalib.dir/agents/agentprogram.cpp.o.d -o CMakeFiles/salalib.dir/agents/agentprogram.cpp.o -c /data/gannet/ripley/R/packages/tests-clang/alcyon/src/libs/salalib/agents/agentprogram.cpp
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** libs
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make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/alcyon/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c main.cpp -o build-Release/main.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c communicator.cpp -o build-Release/communicator.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c rcpp_ShapeMap.cpp -o build-Release/rcpp_ShapeMap.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c rcpp_ShapeGraph.cpp -o build-Release/rcpp_ShapeGraph.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c rcpp_AllLineMap.cpp -o build-Release/rcpp_AllLineMap.o
rcpp_ShapeMap.cpp:122:21: warning: unused variable 'firstPoint' [-Wunused-variable]
  122 |         const auto &firstPoint = *shape.second.points.begin();
      |                     ^~~~~~~~~~
rcpp_ShapeMap.cpp:123:21: warning: unused variable 'lastPoint' [-Wunused-variable]
  123 |         const auto &lastPoint = *shape.second.points.rbegin();
      |                     ^~~~~~~~~
rcpp_ShapeMap.cpp:114:11: warning: unused variable 'TOLERANCE' [-Wunused-variable]
  114 |     float TOLERANCE = 0.0001;
      |           ^~~~~~~~~
rcpp_ShapeMap.cpp:179:11: warning: unused variable 'TOLERANCE' [-Wunused-variable]
  179 |     float TOLERANCE = 0.0001;
      |           ^~~~~~~~~
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c rcpp_PointMap.cpp -o build-Release/rcpp_PointMap.o
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c rcpp_metagraphdata.cpp -o build-Release/rcpp_metagraphdata.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c process_convertInternal.cpp -o build-Release/process_convertInternal.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c process_convertExternal.cpp -o build-Release/process_convertExternal.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c process_link.cpp -o build-Release/process_link.o
process_convertInternal.cpp:78:10: warning: unused variable 'keeporiginal' [-Wunused-variable]
   78 |     auto keeporiginal = NullableValue::get(keeporiginalNV, true);
      |          ^~~~~~~~~~~~
process_convertInternal.cpp:82:10: warning: unused variable 'converted' [-Wunused-variable]
   82 |     bool converted = true;
      |          ^~~~~~~~~
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c process_isovist.cpp -o build-Release/process_isovist.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c analysis_axial.cpp -o build-Release/analysis_axial.o
2 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c analysis_segment.cpp -o build-Release/analysis_segment.o
analysis_segment.cpp:38:10: warning: unused variable 'selOnly' [-Wunused-variable]
   38 |     auto selOnly = NullableValue::get(selOnlyNV, false);
      |          ^~~~~~~
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c analysis_segmentDepth.cpp -o build-Release/analysis_segmentDepth.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c analysis_segmentShortestPath.cpp -o build-Release/analysis_segmentShortestPath.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c analysis_allFewest.cpp -o build-Release/analysis_allFewest.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c analysis_vgaGlobal.cpp -o build-Release/analysis_vgaGlobal.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c analysis_vgaLocal.cpp -o build-Release/analysis_vgaLocal.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c analysis_vgaIsovist.cpp -o build-Release/analysis_vgaIsovist.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c analysis_vgaDepth.cpp -o build-Release/analysis_vgaDepth.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c analysis_vgaShortestPath.cpp -o build-Release/analysis_vgaShortestPath.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c analysis_agent.cpp -o build-Release/analysis_agent.o
analysis_vgaShortestPath.cpp:25:10: warning: unused variable 'verbose' [-Wunused-variable]
   25 |     auto verbose = NullableValue::get(verboseNV, false);
      |          ^~~~~~~
analysis_vgaShortestPath.cpp:89:10: warning: unused variable 'verbose' [-Wunused-variable]
   89 |     auto verbose = NullableValue::get(verboseNV, false);
      |          ^~~~~~~
analysis_vgaShortestPath.cpp:153:10: warning: unused variable 'verbose' [-Wunused-variable]
  153 |     auto verbose = NullableValue::get(verboseNV, false);
      |          ^~~~~~~
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c RcppExports.cpp -o build-Release/RcppExports.o
3 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o alcyon.so build-Release/main.o build-Release/communicator.o build-Release/rcpp_ShapeMap.o build-Release/rcpp_ShapeGraph.o build-Release/rcpp_AllLineMap.o build-Release/rcpp_PointMap.o build-Release/rcpp_metagraphdata.o build-Release/process_convertInternal.o build-Release/process_convertExternal.o build-Release/process_link.o build-Release/process_isovist.o build-Release/analysis_axial.o build-Release/analysis_segment.o build-Release/analysis_segmentDepth.o build-Release/analysis_segmentShortestPath.o build-Release/analysis_allFewest.o build-Release/analysis_vgaGlobal.o build-Release/analysis_vgaLocal.o build-Release/analysis_vgaIsovist.o build-Release/analysis_vgaDepth.o build-Release/analysis_vgaShortestPath.o build-Release/analysis_agent.o build-Release/RcppExports.o -fopenmp build-Release/libalcyon_gensala.a
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/alcyon/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/alcyon/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/alcyon/src'
installing to /data/gannet/ripley/R/packages/tests-clang/alcyon.Rcheck/00LOCK-alcyon/00new/alcyon/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (alcyon)