* installing *source* package ‘agop’ ...
** package ‘agop’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/agop/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c adtest.cpp -o adtest.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c agop.cpp -o agop.o
In file included from adtest.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c agops_classical.cpp -o agops_classical.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c agops_dispersion.cpp -o agops_dispersion.o
In file included from agop.cpp:21:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c agops_impact.cpp -o agops_impact.o
In file included from agops_classical.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c check_comonotonicity.cpp -o check_comonotonicity.o
In file included from agops_dispersion.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c distrib_pareto2.cpp -o distrib_pareto2.o
In file included from agops_impact.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c fuzzylogic_implication.cpp -o fuzzylogic_implication.o
In file included from check_comonotonicity.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c fuzzylogic_negation.cpp -o fuzzylogic_negation.o
In file included from distrib_pareto2.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c fuzzylogic_tconorm.cpp -o fuzzylogic_tconorm.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c fuzzylogic_tnorm.cpp -o fuzzylogic_tnorm.o
In file included from fuzzylogic_implication.cpp:21:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c prepare_arg.cpp -o prepare_arg.o
In file included from fuzzylogic_tnorm.cpp:21:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from fuzzylogic_negation.cpp:21:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from fuzzylogic_tconorm.cpp:21:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rel_antisymmetry.cpp -o rel_antisymmetry.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rel_asymmetry.cpp -o rel_asymmetry.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rel_cyclicity.cpp -o rel_cyclicity.o
In file included from prepare_arg.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rel_examples.cpp -o rel_examples.o
In file included from rel_cyclicity.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from rel_antisymmetry.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rel_hasse.cpp -o rel_hasse.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rel_irreflexivity.cpp -o rel_irreflexivity.o
In file included from rel_asymmetry.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rel_reflexivity.cpp -o rel_reflexivity.o
In file included from rel_examples.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rel_symmetry.cpp -o rel_symmetry.o
In file included from rel_hasse.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rel_totality.cpp -o rel_totality.o
In file included from rel_reflexivity.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
In file included from rel_irreflexivity.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rel_transitivity.cpp -o rel_transitivity.o
1 warning generated.
In file included from rel_symmetry.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
In file included from rel_totality.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
In file included from rel_transitivity.cpp:23:
./agop.h:38:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
38 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o agop.so adtest.o agop.o agops_classical.o agops_dispersion.o agops_impact.o check_comonotonicity.o distrib_pareto2.o fuzzylogic_implication.o fuzzylogic_negation.o fuzzylogic_tconorm.o fuzzylogic_tnorm.o prepare_arg.o rel_antisymmetry.o rel_asymmetry.o rel_cyclicity.o rel_examples.o rel_hasse.o rel_irreflexivity.o rel_reflexivity.o rel_symmetry.o rel_totality.o rel_transitivity.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/agop/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/agop/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/agop/src'
installing to /data/gannet/ripley/R/packages/tests-clang/agop.Rcheck/00LOCK-agop/00new/agop/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (agop)