Install log for 'TPmsm'

* installing *source* package ‘TPmsm’ ...
** package ‘TPmsm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.3’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/TPmsm/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c BtoTPCmsm.c -o BtoTPCmsm.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c BtoTPmsm.c -o BtoTPmsm.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c RngArray.c -o RngArray.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c RngBoot.c -o RngBoot.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c RngStream.c -o RngStream.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c dgpTP.c -o dgpTP.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c get.c -o get.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c kmsurv.c -o kmsurv.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c logistic.c -o logistic.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c object.c -o object.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c quantile.c -o quantile.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c rseed.c -o rseed.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c rthreads.c -o rthreads.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c sample.c -o sample.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c sort.c -o sort.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c splines.c -o splines.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c toTPCmsm.c -o toTPCmsm.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c toTPmsm.c -o toTPmsm.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transAJ.c -o transAJ.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transIPCW1.c -o transIPCW1.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transIPCW2.c -o transIPCW2.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transKMPW1.c -o transKMPW1.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transKMPW2.c -o transKMPW2.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transKMW.c -o transKMW.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transKMW1.c -o transKMW1.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transKMW2.c -o transKMW2.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transLIN1.c -o transLIN1.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transLIN2.c -o transLIN2.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transLS.c -o transLS.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c transPAJ.c -o transPAJ.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c unique.c -o unique.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c uniqueTP.c -o uniqueTP.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c unload.c -o unload.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c wikmsurv.c -o wikmsurv.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c window.c -o window.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp -fvisibility=hidden -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c wkmsurv.c -o wkmsurv.o
/usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o TPmsm.so BtoTPCmsm.o BtoTPmsm.o RngArray.o RngBoot.o RngStream.o dgpTP.o get.o init.o kmsurv.o logistic.o object.o quantile.o rseed.o rthreads.o sample.o sort.o splines.o toTPCmsm.o toTPmsm.o transAJ.o transIPCW1.o transIPCW2.o transKMPW1.o transKMPW2.o transKMW.o transKMW1.o transKMW2.o transLIN1.o transLIN2.o transLS.o transPAJ.o unique.o uniqueTP.o unload.o wikmsurv.o window.o wkmsurv.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/TPmsm/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/TPmsm/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/TPmsm/src'
installing to /data/gannet/ripley/R/packages/tests-clang/TPmsm.Rcheck/00LOCK-TPmsm/00new/TPmsm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TPmsm)