* installing *source* package ‘SubTite’ ...
** package ‘SubTite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/SubTite/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c SUBGROUP.cpp -o SUBGROUP.o
SUBGROUP.cpp:186:7: warning: unused variable 'j' [-Wunused-variable]
186 | int j=0;
| ^
SUBGROUP.cpp:250:7: warning: unused variable 'j' [-Wunused-variable]
250 | int j=0;
| ^
SUBGROUP.cpp:418:7: warning: unused variable 'MEANS' [-Wunused-variable]
418 | int MEANS=0;
| ^~~~~
SUBGROUP.cpp:420:7: warning: unused variable 'IntIN' [-Wunused-variable]
420 | int IntIN=0;
| ^~~~~
SUBGROUP.cpp:421:7: warning: unused variable 'IntOUT' [-Wunused-variable]
421 | int IntOUT=0;
| ^~~~~~
SUBGROUP.cpp:430:7: warning: unused variable 'Group' [-Wunused-variable]
430 | int Group=0;
| ^~~~~
SUBGROUP.cpp:433:7: warning: unused variable 'i' [-Wunused-variable]
433 | int i=0; //For the patient index
| ^
SUBGROUP.cpp:434:7: warning: unused variable 'rep' [-Wunused-variable]
434 | int rep=0; //For the simulation repetition.
| ^~~
SUBGROUP.cpp:455:10: warning: unused variable 'NewMean' [-Wunused-variable]
455 | double NewMean=0;
| ^~~~~~~
SUBGROUP.cpp:456:10: warning: unused variable 'NewSlope' [-Wunused-variable]
456 | double NewSlope=0;
| ^~~~~~~~
SUBGROUP.cpp:457:7: warning: unused variable 'Which1' [-Wunused-variable]
457 | int Which1=0;
| ^~~~~~
SUBGROUP.cpp:458:7: warning: unused variable 'J' [-Wunused-variable]
458 | int J=Dose.n_rows; //Number of Doses
| ^
SUBGROUP.cpp:465:10: warning: unused variable 'signew' [-Wunused-variable]
465 | double signew=0;
| ^~~~~~
SUBGROUP.cpp:515:10: warning: unused variable 'trialtime' [-Wunused-variable]
515 | double trialtime=0;
| ^~~~~~~~~
SUBGROUP.cpp:519:10: warning: variable 'NumSig' set but not used [-Wunused-but-set-variable]
519 | double NumSig=2;
| ^
SUBGROUP.cpp:520:10: warning: variable 'IntSig' set but not used [-Wunused-but-set-variable]
520 | double IntSig=1;
| ^
SUBGROUP.cpp:521:10: warning: unused variable 'sigvar' [-Wunused-variable]
521 | double sigvar=1;
| ^~~~~~
SUBGROUP.cpp:532:10: warning: unused variable 'DEC' [-Wunused-variable]
532 | double DEC=0;
| ^~~
SUBGROUP.cpp:1912:7: warning: unused variable 'MEANS' [-Wunused-variable]
1912 | int MEANS=0;
| ^~~~~
SUBGROUP.cpp:1914:7: warning: unused variable 'IntIN' [-Wunused-variable]
1914 | int IntIN=0;
| ^~~~~
SUBGROUP.cpp:1915:7: warning: unused variable 'IntOUT' [-Wunused-variable]
1915 | int IntOUT=0;
| ^~~~~~
SUBGROUP.cpp:1924:7: warning: unused variable 'Group' [-Wunused-variable]
1924 | int Group=0;
| ^~~~~
SUBGROUP.cpp:1927:7: warning: unused variable 'i' [-Wunused-variable]
1927 | int i=0; //For the patient index
| ^
SUBGROUP.cpp:1928:7: warning: unused variable 'rep' [-Wunused-variable]
1928 | int rep=0; //For the simulation repetition.
| ^~~
SUBGROUP.cpp:1949:10: warning: unused variable 'NewMean' [-Wunused-variable]
1949 | double NewMean=0;
| ^~~~~~~
SUBGROUP.cpp:1950:10: warning: unused variable 'NewSlope' [-Wunused-variable]
1950 | double NewSlope=0;
| ^~~~~~~~
SUBGROUP.cpp:1951:7: warning: unused variable 'Which1' [-Wunused-variable]
1951 | int Which1=0;
| ^~~~~~
SUBGROUP.cpp:1952:7: warning: unused variable 'J' [-Wunused-variable]
1952 | int J=Dose.n_rows; //Number of Doses
| ^
SUBGROUP.cpp:1959:10: warning: unused variable 'signew' [-Wunused-variable]
1959 | double signew=0;
| ^~~~~~
SUBGROUP.cpp:2010:10: warning: unused variable 'trialtime' [-Wunused-variable]
2010 | double trialtime=0;
| ^~~~~~~~~
SUBGROUP.cpp:2014:10: warning: variable 'NumSig' set but not used [-Wunused-but-set-variable]
2014 | double NumSig=2;
| ^
SUBGROUP.cpp:2015:10: warning: variable 'IntSig' set but not used [-Wunused-but-set-variable]
2015 | double IntSig=1;
| ^
SUBGROUP.cpp:2016:10: warning: unused variable 'sigvar' [-Wunused-variable]
2016 | double sigvar=1;
| ^~~~~~
SUBGROUP.cpp:2027:10: warning: unused variable 'DEC' [-Wunused-variable]
2027 | double DEC=0;
| ^~~
SUBGROUP.cpp:3418:7: warning: unused variable 'MEANS' [-Wunused-variable]
3418 | int MEANS=0;
| ^~~~~
SUBGROUP.cpp:3420:7: warning: unused variable 'IntIN' [-Wunused-variable]
3420 | int IntIN=0;
| ^~~~~
SUBGROUP.cpp:3421:7: warning: unused variable 'IntOUT' [-Wunused-variable]
3421 | int IntOUT=0;
| ^~~~~~
SUBGROUP.cpp:3424:10: warning: unused variable 'varbeta1' [-Wunused-variable]
3424 | double varbeta1=varbeta;
| ^~~~~~~~
SUBGROUP.cpp:3426:10: warning: unused variable 'varint1' [-Wunused-variable]
3426 | double varint1=varint;
| ^~~~~~~
SUBGROUP.cpp:3465:10: warning: unused variable 'mu' [-Wunused-variable]
3465 | double mu=meanmu;
| ^~
SUBGROUP.cpp:3466:10: warning: unused variable 'slope' [-Wunused-variable]
3466 | double slope=meanslope;
| ^~~~~
SUBGROUP.cpp:3467:10: warning: unused variable 'sig' [-Wunused-variable]
3467 | double sig=T1;
| ^~~
SUBGROUP.cpp:3469:10: warning: unused variable 'NewMean' [-Wunused-variable]
3469 | double NewMean=0;
| ^~~~~~~
SUBGROUP.cpp:3470:10: warning: unused variable 'NewSlope' [-Wunused-variable]
3470 | double NewSlope=0;
| ^~~~~~~~
SUBGROUP.cpp:3471:7: warning: unused variable 'Which1' [-Wunused-variable]
3471 | int Which1=0;
| ^~~~~~
SUBGROUP.cpp:3477:10: warning: unused variable 'alpha' [-Wunused-variable]
3477 | double alpha=0;
| ^~~~~
SUBGROUP.cpp:3478:10: warning: unused variable 'U' [-Wunused-variable]
3478 | double U=0;
| ^
SUBGROUP.cpp:3479:10: warning: unused variable 'signew' [-Wunused-variable]
3479 | double signew=0;
| ^~~~~~
SUBGROUP.cpp:3480:10: warning: unused variable 'slopenew' [-Wunused-variable]
3480 | double slopenew=0;
| ^~~~~~~~
SUBGROUP.cpp:3481:10: warning: unused variable 'Munew' [-Wunused-variable]
3481 | double Munew=0;
| ^~~~~
SUBGROUP.cpp:3492:7: warning: unused variable 'StoreInx' [-Wunused-variable]
3492 | int StoreInx=0;
| ^~~~~~~~
SUBGROUP.cpp:3514:10: warning: unused variable 'NumMu' [-Wunused-variable]
3514 | double NumMu = 2;
| ^~~~~
SUBGROUP.cpp:3515:10: warning: unused variable 'NumSlope' [-Wunused-variable]
3515 | double NumSlope=2;
| ^~~~~~~~
SUBGROUP.cpp:3516:10: warning: unused variable 'IntMu' [-Wunused-variable]
3516 | double IntMu=1;
| ^~~~~
SUBGROUP.cpp:3517:10: warning: unused variable 'IntSlope' [-Wunused-variable]
3517 | double IntSlope=1;
| ^~~~~~~~
SUBGROUP.cpp:3530:10: warning: unused variable 'muvar' [-Wunused-variable]
3530 | double muvar=1;
| ^~~~~
SUBGROUP.cpp:3531:10: warning: unused variable 'slopevar' [-Wunused-variable]
3531 | double slopevar=1;
| ^~~~~~~~
SUBGROUP.cpp:3536:10: warning: unused variable 'NumSig' [-Wunused-variable]
3536 | double NumSig=2;
| ^~~~~~
SUBGROUP.cpp:3537:10: warning: unused variable 'IntSig' [-Wunused-variable]
3537 | double IntSig=1;
| ^~~~~~
SUBGROUP.cpp:3538:10: warning: unused variable 'sigvar' [-Wunused-variable]
3538 | double sigvar=1;
| ^~~~~~
SUBGROUP.cpp:3565:7: warning: unused variable 'eta2' [-Wunused-variable]
3565 | int eta2=0;
| ^~~~
61 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o SubTite.so RcppExports.o SUBGROUP.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/SubTite/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/SubTite/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/SubTite/src'
installing to /data/gannet/ripley/R/packages/tests-clang/SubTite.Rcheck/00LOCK-SubTite/00new/SubTite/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SubTite)