* installing *source* package ‘RProtoBuf’ ...
** this is package ‘RProtoBuf’ version ‘0.4.23’
** package ‘RProtoBuf’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 accepts -g... yes
checking for /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -E
checking for gcc... /usr/local/clang19/bin/clang
checking whether the compiler supports GNU C... yes
checking whether /usr/local/clang19/bin/clang accepts -g... yes
checking for /usr/local/clang19/bin/clang option to enable C11 features... none needed
checking whether the compiler supports GNU C++... (cached) yes
checking whether /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 accepts -g... (cached) yes
checking for /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 option to enable C++11 features... (cached) none needed
checking for pkg-config... yes
checking for protoc... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for google/protobuf/stubs/common.h... yes
checking for google/protobuf/compiler/code_generator.h... yes
checking if ProtoBuf version >= 2.2.0... yes
checking for R... yes
configure: creating ./config.status
config.status: creating src/Makevars
RProtoBuf 0.4.23
================
cflags: -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include
libs: -L/usr/local/clang/lib64 -lprotobuf
** libs
using C compiler: ‘clang version 19.1.7’
using C++ compiler: ‘clang version 19.1.7’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RProtoBuf/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ConnectionCopyingInputStream.cpp -o ConnectionCopyingInputStream.o
In file included from ConnectionCopyingInputStream.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ConnectionCopyingOutputStream.cpp -o ConnectionCopyingOutputStream.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ConnectionInputStream.cpp -o ConnectionInputStream.o
In file included from ConnectionCopyingOutputStream.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ConnectionOutputStream.cpp -o ConnectionOutputStream.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c DescriptorPoolLookup.cpp -o DescriptorPoolLookup.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RSourceTree.cpp -o RSourceTree.o
In file included from ConnectionInputStream.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RWarningErrorCollector.cpp -o RWarningErrorCollector.o
In file included from ConnectionOutputStream.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from DescriptorPoolLookup.cpp:21:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RconnectionCopyingInputStream.cpp -o RconnectionCopyingInputStream.o
1 warning generated.
In file included from RSourceTree.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ZeroCopyInputStreamWrapper.cpp -o ZeroCopyInputStreamWrapper.o
In file included from RWarningErrorCollector.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ZeroCopyOutputStreamWrapper.cpp -o ZeroCopyOutputStreamWrapper.o
1 warning generated.
In file included from RconnectionCopyingInputStream.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c extensions.cpp -o extensions.o
In file included from ZeroCopyInputStreamWrapper.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from ZeroCopyOutputStreamWrapper.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
In file included from extensions.cpp:22:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c extractors.cpp -o extractors.o
1 warning generated.
In file included from extractors.cpp:19:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c lookup.cpp -o lookup.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c mutators.cpp -o mutators.o
In file included from lookup.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from mutators.cpp:19:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c rprotobuf.cpp -o rprotobuf.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c streams.cpp -o streams.o
In file included from rprotobuf.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from streams.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wrapper_ArrayInputStream.cpp -o wrapper_ArrayInputStream.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wrapper_ArrayOutputStream.cpp -o wrapper_ArrayOutputStream.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wrapper_Descriptor.cpp -o wrapper_Descriptor.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wrapper_EnumDescriptor.cpp -o wrapper_EnumDescriptor.o
In file included from wrapper_ArrayInputStream.cpp:3:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from wrapper_ArrayOutputStream.cpp:3:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from wrapper_EnumDescriptor.cpp:21:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from wrapper_Descriptor.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wrapper_EnumValueDescriptor.cpp -o wrapper_EnumValueDescriptor.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wrapper_FieldDescriptor.cpp -o wrapper_FieldDescriptor.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wrapper_FileDescriptor.cpp -o wrapper_FileDescriptor.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wrapper_Message.cpp -o wrapper_Message.o
In file included from wrapper_EnumValueDescriptor.cpp:21:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
In file included from wrapper_FieldDescriptor.cpp:19:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from wrapper_FileDescriptor.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wrapper_MethodDescriptor.cpp -o wrapper_MethodDescriptor.o
In file included from wrapper_Message.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wrapper_ServiceDescriptor.cpp -o wrapper_ServiceDescriptor.o
1 warning generated.
1 warning generated.
In file included from wrapper_MethodDescriptor.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wrapper_ZeroCopyInputStream.cpp -o wrapper_ZeroCopyInputStream.o
In file included from wrapper_ServiceDescriptor.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
In file included from wrapper_ZeroCopyInputStream.cpp:2:
./rprotobuf.h:54:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
54 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
1 warning generated.
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o RProtoBuf.so ConnectionCopyingInputStream.o ConnectionCopyingOutputStream.o ConnectionInputStream.o ConnectionOutputStream.o DescriptorPoolLookup.o RSourceTree.o RWarningErrorCollector.o RconnectionCopyingInputStream.o ZeroCopyInputStreamWrapper.o ZeroCopyOutputStreamWrapper.o extensions.o extractors.o init.o lookup.o mutators.o rprotobuf.o streams.o wrapper_ArrayInputStream.o wrapper_ArrayOutputStream.o wrapper_Descriptor.o wrapper_EnumDescriptor.o wrapper_EnumValueDescriptor.o wrapper_FieldDescriptor.o wrapper_FileDescriptor.o wrapper_Message.o wrapper_MethodDescriptor.o wrapper_ServiceDescriptor.o wrapper_ZeroCopyInputStream.o -L/usr/local/clang/lib64 -lprotobuf
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RProtoBuf/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RProtoBuf/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RProtoBuf/src'
installing to /data/gannet/ripley/R/packages/tests-clang/RProtoBuf.Rcheck/00LOCK-RProtoBuf/00new/RProtoBuf/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RProtoBuf)