• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.8     flang version 21.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘R6causal/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘R6causal’ version ‘0.8.3’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘R6causal’ can be installed ... [23s/37s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s/19s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... ERROR Running examples in ‘R6causal-Ex.R’ failed The error most likely occurred in: > ### Name: generate_condprob > ### Title: Define structural function by a conditional probability table > ### Aliases: generate_condprob > > ### ** Examples > > ycondx <- data.table::data.table(y =rep(c(0,1), each = 3), x=rep(1:3, 2), + prob = c(0.2,0.6,0.1,0.8,0.4,0.9)) > x <- data.table::data.table(x = sample(1:3, 20, replace = TRUE), + uy = stats::runif(20), uy2 = stats::runif(20)) > generate_condprob(ycondx, x, Umerge_expr = "(uy+uy2)/2") Error in `[.data.table`(longdt, , `:=`(c("R6causal_temp_lower", "R6causal_temp_upper"), :   attempt access index 9/9 in VECTOR_ELT Calls: generate_condprob -> [ -> [.data.table Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [12s/15s] ERROR Error(s) in re-building vignettes: --- re-building ‘using_R6causal.Rmd’ using rmarkdown Quitting from using_R6causal.Rmd:188-195 [simulatebackdoor] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `backdoor_condprob$simulate()`: ! Method simulate() failed when processing variable z . The lower level error message was: Error in `[.data.table`(longdt, , `:=`(c("R6causal_temp_lower", "R6causal_temp_upper"), :   attempt access index 7/7 in VECTOR_ELT --- Backtrace:     x  1. \-backdoor_condprob$simulate(30) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'using_R6causal.Rmd' failed with diagnostics: Method simulate() failed when processing variable z . The lower level error message was: Error in `[.data.table`(longdt, , `:=`(c("R6causal_temp_lower", "R6causal_temp_upper"), :   attempt access index 7/7 in VECTOR_ELT --- failed re-building ‘using_R6causal.Rmd’ SUMMARY: processing the following file failed:   ‘using_R6causal.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [8s/12s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs