• using R Under development (unstable) (2024-12-10 r87437)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 19.1.5     flang-new version 19.1.5
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘R0/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘R0’ version ‘1.3-1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘R0’ can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/19s] OK
• checking Rd files ... NOTE checkRd: (-1) est.R0.ML.Rd:98: Lost braces     98 | Supplementary Material S1 from \doi{10.1186/1472-6947-12-147}{Obadia et al., 2012}.        | ^ checkRd: (-1) plot.R0.R.Rd:20: Lost braces     20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from one estimation method.        | ^ checkRd: (-1) plot.R0.sR.Rd:20: Lost braces     20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from an        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... INFO Undeclared package ‘epitools’ in Rd xrefs
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [10s/11s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [16s/21s] OK   Running ‘check.incid.R’   Running ‘est.GT.R’   Running ‘est.R0.AR.R’   Running ‘est.R0.EG.R’   Running ‘est.R0.ML.R’   Running ‘est.R0.SB.R’   Running ‘est.R0.TD.R’   Running ‘estimate.R.R’   Running ‘generation.time.R’   Running ‘sensitivity.analysis.R’   Running ‘sim.epid.R’   Running ‘smooth.Rt.R’
• checking PDF version of manual ... [12s/17s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE