* installing *source* package ‘ProFAST’ ...
** this is package ‘ProFAST’ version ‘1.4’
** package ‘ProFAST’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 20.1.0-rc2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ProFAST/src'
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   "-DARMA_64BIT_WORD=1" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c DR_removebatch.cpp -o DR_removebatch.o
DR_removebatch.cpp:15:9: warning: 'INT_MIN' macro redefined [-Wmacro-redefined]
   15 | #define INT_MIN (-INT_MAX - 1)
      |         ^
/usr/local/clang20/lib/clang/20/include/limits.h:55:9: note: previous definition is here
   55 | #define INT_MIN   (-__INT_MAX__  -1)
      |         ^
DR_removebatch.cpp:432:7: warning: unused variable 'i' [-Wunused-variable]
  432 |   int i, iter, k, n;
      |       ^
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   "-DARMA_64BIT_WORD=1" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   "-DARMA_64BIT_WORD=1" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c alignExp.cpp -o alignExp.o
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   "-DARMA_64BIT_WORD=1" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c alignExps.cpp -o alignExps.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   "-DARMA_64BIT_WORD=1" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c cofast_util.cpp -o cofast_util.o
alignExp.cpp:8:9: warning: 'INT_MIN' macro redefined [-Wmacro-redefined]
    8 | #define INT_MIN (-INT_MAX - 1)
      |         ^
/usr/local/clang20/lib/clang/20/include/limits.h:55:9: note: previous definition is here
   55 | #define INT_MIN   (-__INT_MAX__  -1)
      |         ^
alignExp.cpp:180:7: warning: unused variable 'n' [-Wunused-variable]
  180 |   int n;
      |       ^
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   "-DARMA_64BIT_WORD=1" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c profast.cpp -o profast.o
alignExps.cpp:8:9: warning: 'INT_MIN' macro redefined [-Wmacro-redefined]
    8 | #define INT_MIN (-INT_MAX - 1)
      |         ^
/usr/local/clang20/lib/clang/20/include/limits.h:55:9: note: previous definition is here
   55 | #define INT_MIN   (-__INT_MAX__  -1)
      |         ^
profast.cpp:14:9: warning: 'INT_MIN' macro redefined [-Wmacro-redefined]
   14 | #define INT_MIN (-INT_MAX - 1)
      |         ^
/usr/local/clang20/lib/clang/20/include/limits.h:55:9: note: previous definition is here
   55 | #define INT_MIN   (-__INT_MAX__  -1)
      |         ^
2 warnings generated.
profast.cpp:408:7: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  408 |   int n;
      |       ^
1 warning generated.
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o ProFAST.so DR_removebatch.o RcppExports.o alignExp.o alignExps.o cofast_util.o profast.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ProFAST/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ProFAST/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ProFAST/src'
installing to /data/gannet/ripley/R/packages/tests-clang/ProFAST.Rcheck/00LOCK-ProFAST/00new/ProFAST/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ProFAST)