• using R Under development (unstable) (2024-11-09 r87314)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 19.1.3     flang-new version 19.1.3
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘Phase12Compare/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘Phase12Compare’ version ‘1.5’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘Phase12Compare’ can be installed ... [59s/59s] OK See the install log for details.
• used C++ compiler: ‘clang version 19.1.3’
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s/18s] OK
• checking Rd files ... NOTE checkRd: (-1) GetEfftoxContour.Rd:37: Lost braces; missing escapes or markup?     37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:37: Lost braces; missing escapes or markup?     37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:37: Lost braces; missing escapes or markup?     37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:37: Lost braces; missing escapes or markup?     37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:47: Lost braces; missing escapes or markup?     47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:47: Lost braces; missing escapes or markup?     47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:47: Lost braces; missing escapes or markup?     47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:47: Lost braces; missing escapes or markup?     47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:47: Lost braces; missing escapes or markup?     47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxContour.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxUt.Rd:47: Lost braces; missing escapes or markup?     47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxUt.Rd:47: Lost braces; missing escapes or markup?     47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxUt.Rd:47: Lost braces; missing escapes or markup?     47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxUt.Rd:47: Lost braces; missing escapes or markup?     47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxUt.Rd:47: Lost braces; missing escapes or markup?     47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxUt.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxUt.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxUt.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxUt.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetEfftoxUt.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) GetSpsoContour.Rd:35: Lost braces; missing escapes or markup?     35 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) GetSpsoContour.Rd:35: Lost braces; missing escapes or markup?     35 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) GetSpsoContour.Rd:35: Lost braces; missing escapes or markup?     35 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) GetSpsoContour.Rd:35: Lost braces; missing escapes or markup?     35 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:39: Lost braces; missing escapes or markup?     39 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:39: Lost braces; missing escapes or markup?     39 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:39: Lost braces; missing escapes or markup?     39 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:39: Lost braces; missing escapes or markup?     39 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:51: Lost braces; missing escapes or markup?     51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:51: Lost braces; missing escapes or markup?     51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:51: Lost braces; missing escapes or markup?     51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:51: Lost braces; missing escapes or markup?     51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxContour.Rd:51: Lost braces; missing escapes or markup?     51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxUt.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxUt.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxUt.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxUt.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxUt.Rd:49: Lost braces; missing escapes or markup?     49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxUt.Rd:51: Lost braces; missing escapes or markup?     51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxUt.Rd:51: Lost braces; missing escapes or markup?     51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxUt.Rd:51: Lost braces; missing escapes or markup?     51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxUt.Rd:51: Lost braces; missing escapes or markup?     51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimEfftoxUt.Rd:51: Lost braces; missing escapes or markup?     51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}        | ^ checkRd: (-1) SimSpsoContour.Rd:37: Lost braces; missing escapes or markup?     37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) SimSpsoContour.Rd:37: Lost braces; missing escapes or markup?     37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) SimSpsoContour.Rd:37: Lost braces; missing escapes or markup?     37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^ checkRd: (-1) SimSpsoContour.Rd:37: Lost braces; missing escapes or markup?     37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [8s/11s] OK
• checking PDF version of manual ... [7s/11s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE