- using R Under development (unstable) (2024-11-29 r87396)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 19.1.4
flang-new version 19.1.4
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘PaRe/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘PaRe’ version ‘0.1.14’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘PaRe’ can be installed ... [18s/98s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... [2s/11s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/13s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/12s] OK
- checking loading without being on the library search path ... [3s/17s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [18s/51s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... INFO
Undeclared packages ‘tidygraph’, ‘htmlwidgets’ in Rd xrefs
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [9s/49s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [55s/182s] ERROR
Running ‘testthat.R’ [55s/181s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(PaRe)
>
> test_check("PaRe")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 15 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• utils::packageVersion(pkg = "base") > package_version("4.4.0") is TRUE (1):
'test-checkDependencies.R:18:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-checkDependencies.R:36:3'): parallel ───────────────────────────
<vctrs_error_subscript_oob/vctrs_error_subscript/rlang_error/error/condition>
Error in `dplyr::select(., "package", version)`: Can't select columns that don't exist.
x Column `package` doesn't exist.
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-checkDependencies.R:36:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─base::suppressWarnings(checkDependencies(repo = repo, nThreads = 2))
8. │ └─base::withCallingHandlers(...)
9. ├─PaRe::checkDependencies(repo = repo, nThreads = 2)
10. │ └─PaRe::getDefaultPermittedPackages(nThreads)
11. │ └─depList %>% dplyr::select("package", version) %>% ...
12. ├─dplyr::bind_rows(., basePackages)
13. │ └─rlang::list2(...)
14. ├─dplyr::select(., "package", version)
15. ├─dplyr:::select.data.frame(., "package", version)
16. │ └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call)
17. │ └─tidyselect:::eval_select_impl(...)
18. │ ├─tidyselect:::with_subscript_errors(...)
19. │ │ └─base::withCallingHandlers(...)
20. │ └─tidyselect:::vars_select_eval(...)
21. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask)
22. │ └─tidyselect:::eval_c(expr, data_mask, context_mask)
23. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
24. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask)
25. │ └─tidyselect:::as_indices_sel_impl(...)
26. │ └─tidyselect:::as_indices_impl(...)
27. │ └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg)
28. │ └─vctrs::vec_as_location(...)
29. └─vctrs (local) `<fn>`()
30. └─vctrs:::stop_subscript_oob(...)
31. └─vctrs:::stop_subscript(...)
32. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 15 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [32s/135s] OK
- checking PDF version of manual ... [9s/38s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR