• using R Under development (unstable) (2024-11-09 r87314)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 19.1.3     flang-new version 19.1.3
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘PGRdup/DESCRIPTION’ ... OK
• this is package ‘PGRdup’ version ‘0.2.3.9’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PGRdup’ can be installed ... [16s/23s] OK See the install log for details.
• used C compiler: ‘clang version 19.1.3’
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [22s/28s] OK
• checking Rd files ... NOTE checkRd: (-1) GN1000.Rd:8: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:8: Lost braces      8 | columns(fields): \itemize{ \item{CommonName}{ : }{Common name}        | ^ checkRd: (-1) GN1000.Rd:9: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:9: Lost braces      9 | \item{BotanicalName}{ : }{Botanical name} \item{NationalID}{ : }{NBPGR        | ^ checkRd: (-1) GN1000.Rd:9-10: Lost braces      9 | \item{BotanicalName}{ : }{Botanical name} \item{NationalID}{ : }{NBPGR        | ^ checkRd: (-1) GN1000.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:10: Lost braces     10 | National identifier} \item{CollNo}{ : }{Collector number} \item{DonorID}{ :        | ^ checkRd: (-1) GN1000.Rd:10-11: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:11: Lost braces     11 | }{Donor ID} \item{OtherID1}{ : }{Other ID field 1} \item{OtherID2}{ :        | ^ checkRd: (-1) GN1000.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:11: Lost braces     11 | }{Donor ID} \item{OtherID1}{ : }{Other ID field 1} \item{OtherID2}{ :        | ^ checkRd: (-1) GN1000.Rd:11-12: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:12: Lost braces     12 | }{Other ID field 2} \item{BioStatus}{ : }{Biological status}        | ^ checkRd: (-1) GN1000.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:12: Lost braces     12 | }{Other ID field 2} \item{BioStatus}{ : }{Biological status}        | ^ checkRd: (-1) GN1000.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:13: Lost braces     13 | \item{SourceCountry}{ : }{Country of origin} \item{TransferYear}{ : }{Year        | ^ checkRd: (-1) GN1000.Rd:13-14: Lost braces     13 | \item{SourceCountry}{ : }{Country of origin} \item{TransferYear}{ : }{Year        | ^ checkRd: (-1) ReviewProbDup.Rd:35: Lost braces     35 | \item{insert.blanks}{logical. If \code{TRUE}, inserts a row of /code{NAs}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [82s/100s] OK
• checking PDF version of manual ... [8s/13s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE