* installing *source* package ‘OpenMx’ ...
** package ‘OpenMx’ successfully unpacked and MD5 sums checked
** using staged installation
NOTE: ./configure is not an autoconf generated script.
Change default C/C++ compiler and default compile flags by editing ~/.R/Makevars
** libs
using C compiler: ‘clang version 19.1.5’
using Fortran compiler: ‘flang-new version 19.1.5’
using C++ compiler: ‘clang version 19.1.5’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/OpenMx/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c Compute.cpp -o Compute.o
In file included from Compute.cpp:25:
In file included from ./glue.h:23:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from Compute.cpp:25:
In file included from ./glue.h:23:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from Compute.cpp:25:
In file included from ./glue.h:23:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
Compute.cpp:1650:45: warning: struct 'omxCompute' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
 1650 |         LeaveComputeWithVarGroup(FitContext *u_fc, struct omxCompute *compute) : fc(u_fc), name(compute->name) {
      |                                                    ^
./Compute.h:364:7: note: previous use is here
  364 | class omxCompute {
      |       ^
Compute.cpp:1650:45: note: did you mean class here?
 1650 |         LeaveComputeWithVarGroup(FitContext *u_fc, struct omxCompute *compute) : fc(u_fc), name(compute->name) {
      |                                                    ^~~~~~
      |                                                    class
5 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c ComputeGD.cpp -o ComputeGD.o
In file included from ComputeGD.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from ComputeGD.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from ComputeGD.cpp:18:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
ComputeGD.cpp:1610:1: warning: 'ComputeGenSA' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
 1610 | class ComputeGenSA : public omxCompute {
      | ^
./asa_usr_asa.h:577:5: note: did you mean class here?
  577 |     OPTIONAL_PTR_TYPE *Asa_Data_Ptr;
      |     ^
./asa_usr_asa.h:46:27: note: expanded from macro 'OPTIONAL_PTR_TYPE'
   46 | #define OPTIONAL_PTR_TYPE struct ComputeGenSA
      |                           ^
ComputeGD.cpp:201:25: warning: private field 'gradientAlgo' is not used [-Wunused-private-field]
  201 |         enum GradientAlgorithm gradientAlgo;
      |                                ^
ComputeGD.cpp:202:6: warning: private field 'gradientIterations' is not used [-Wunused-private-field]
  202 |         int gradientIterations;
      |             ^
ComputeGD.cpp:203:9: warning: private field 'gradientStepSize' is not used [-Wunused-private-field]
  203 |         double gradientStepSize;
      |                ^
8 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c ComputeNM.cpp -o ComputeNM.o
In file included from ComputeNM.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from ComputeNM.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from ComputeNM.cpp:18:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c ComputeNR.cpp -o ComputeNR.o
In file included from ComputeNR.cpp:17:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from ComputeNR.cpp:17:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from ComputeNR.cpp:17:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c ComputeSD.cpp -o ComputeSD.o
In file included from ComputeSD.cpp:3:
In file included from ./ComputeGD.h:20:
In file included from ./Compute.h:20:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from ComputeSD.cpp:3:
In file included from ./ComputeGD.h:20:
In file included from ./Compute.h:20:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from ComputeSD.cpp:3:
In file included from ./ComputeGD.h:20:
In file included from ./Compute.h:23:
In file included from ./glue.h:23:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c FellnerFitFunction.cpp -o FellnerFitFunction.o
In file included from FellnerFitFunction.cpp:22:
In file included from ./glue.h:23:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from FellnerFitFunction.cpp:22:
In file included from ./glue.h:23:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from FellnerFitFunction.cpp:22:
In file included from ./glue.h:23:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
In file included from FellnerFitFunction.cpp:29:
In file included from ./RAMInternal.h:12:
./path.h:244:10: warning: unused variable 'symVec' [-Wunused-variable]
  244 |                         auto &symVec = symSolver.eigenvectors();
      |                               ^~~~~~
./path.h:393:11: warning: unused variable 'symVec' [-Wunused-variable]
  393 |     auto &symVec = symSolver.eigenvectors();
      |           ^~~~~~
6 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c MarkovExpectation.cpp -o MarkovExpectation.o
In file included from MarkovExpectation.cpp:17:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from MarkovExpectation.cpp:17:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from MarkovExpectation.cpp:17:
In file included from ./omxExpectation.h:36:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c MarkovFF.cpp -o MarkovFF.o
In file included from MarkovFF.cpp:17:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from MarkovFF.cpp:17:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from MarkovFF.cpp:17:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c asa.c -o asa.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c asubnp.cpp -o asubnp.o
In file included from asubnp.cpp:7:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from asubnp.cpp:7:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from asubnp.cpp:12:
In file included from ./omxCsolnp.h:21:
In file included from ./Compute.h:23:
In file included from ./glue.h:23:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
asubnp.cpp:22:13: warning: unknown pragma ignored [-Wunknown-pragmas]
   22 | #pragma GCC optimize ("no-var-tracking-assignments")
      |             ^
5 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c ba81quad.cpp -o ba81quad.o
In file included from ba81quad.cpp:18:
In file included from ./ba81quad.h:21:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from ba81quad.cpp:18:
In file included from ./ba81quad.h:21:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c dmvnorm.cpp -o dmvnorm.o
In file included from dmvnorm.cpp:1:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from dmvnorm.cpp:1:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from dmvnorm.cpp:4:
In file included from ./glue.h:23:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c fitMultigroup.cpp -o fitMultigroup.o
In file included from fitMultigroup.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from fitMultigroup.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from fitMultigroup.cpp:18:
In file included from ./omxExpectation.h:36:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c general.c -o general.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c glue.cpp -o glue.o
In file included from glue.cpp:21:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from glue.cpp:21:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from glue.cpp:24:
In file included from ./glue.h:23:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
In file included from glue.cpp:38:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from glue.cpp:38:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
6 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c matlogexp.cpp -o matlogexp.o
In file included from matlogexp.cpp:3:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from matlogexp.cpp:3:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c matrix.cpp -o matrix.o
In file included from matrix.cpp:1:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from matrix.cpp:1:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c mvbvn.f -o mvbvn.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c nanotimer.cpp -o nanotimer.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxAlgebra.cpp -o omxAlgebra.o
In file included from omxAlgebra.cpp:30:
In file included from ./omxMatrix.h:36:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxAlgebra.cpp:30:
In file included from ./omxMatrix.h:36:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxAlgebra.cpp:31:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxAlgebraFitFunction.cpp -o omxAlgebraFitFunction.o
In file included from omxAlgebraFitFunction.cpp:17:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxAlgebraFitFunction.cpp:17:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxAlgebraFitFunction.cpp:17:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxData.cpp -o omxData.o
In file included from omxData.cpp:27:
In file included from ./omxData.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxData.cpp:27:
In file included from ./omxData.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxData.cpp:27:
In file included from ./omxData.h:53:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
In file included from omxData.cpp:30:
./omxExpectationBA81.h:98:2: warning: struct 'omxFitFunction' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   98 |         struct omxFitFunction *fit;  // weak pointer
      |         ^
./omxFitFunction.h:42:7: note: previous use is here
   42 | class omxFitFunction {
      |       ^
./omxExpectationBA81.h:98:2: note: did you mean class here?
   98 |         struct omxFitFunction *fit;  // weak pointer
      |         ^~~~~~
      |         class
5 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxExpectation.cpp -o omxExpectation.o
In file included from omxExpectation.cpp:33:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxExpectation.cpp:33:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxExpectation.cpp:33:
In file included from ./omxExpectation.h:36:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxExpectationBA81.cpp -o omxExpectationBA81.o
In file included from omxExpectationBA81.cpp:20:
In file included from ./omxExpectationBA81.h:20:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxExpectationBA81.cpp:20:
In file included from ./omxExpectationBA81.h:20:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxExpectationBA81.cpp:20:
In file included from ./omxExpectationBA81.h:20:
In file included from ./omxExpectation.h:36:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
In file included from omxExpectationBA81.cpp:20:
./omxExpectationBA81.h:98:2: warning: struct 'omxFitFunction' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   98 |         struct omxFitFunction *fit;  // weak pointer
      |         ^
./omxFitFunction.h:42:7: note: previous use is here
   42 | class omxFitFunction {
      |       ^
./omxExpectationBA81.h:98:2: note: did you mean class here?
   98 |         struct omxFitFunction *fit;  // weak pointer
      |         ^~~~~~
      |         class
omxExpectationBA81.cpp:114:45: warning: struct 'omxExpectation' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
  114 | void ba81AggregateDistributions(std::vector<struct omxExpectation *> &expectation,
      |                                             ^
./omxExpectation.h:41:7: note: previous use is here
   41 | class omxExpectation {                                  // An Expectation
      |       ^
omxExpectationBA81.cpp:114:45: note: did you mean class here?
  114 | void ba81AggregateDistributions(std::vector<struct omxExpectation *> &expectation,
      |                                             ^~~~~~
      |                                             class
6 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxExportBackendState.cpp -o omxExportBackendState.o
In file included from omxExportBackendState.cpp:19:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxExportBackendState.cpp:19:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxExportBackendState.cpp:20:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxFIMLFitFunction.cpp -o omxFIMLFitFunction.o
In file included from omxFIMLFitFunction.cpp:18:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxFIMLFitFunction.cpp:18:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxFIMLFitFunction.cpp:20:
In file included from ./omxData.h:53:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxFitFunction.cpp -o omxFitFunction.o
In file included from omxFitFunction.cpp:31:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxFitFunction.cpp:31:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxFitFunction.cpp:31:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxFitFunctionBA81.cpp -o omxFitFunctionBA81.o
In file included from omxFitFunctionBA81.cpp:19:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxFitFunctionBA81.cpp:19:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxFitFunctionBA81.cpp:19:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
In file included from omxFitFunctionBA81.cpp:20:
./omxExpectationBA81.h:98:2: warning: struct 'omxFitFunction' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   98 |         struct omxFitFunction *fit;  // weak pointer
      |         ^
./omxFitFunction.h:42:7: note: previous use is here
   42 | class omxFitFunction {
      |       ^
./omxExpectationBA81.h:98:2: note: did you mean class here?
   98 |         struct omxFitFunction *fit;  // weak pointer
      |         ^~~~~~
      |         class
5 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxGREMLExpectation.cpp -o omxGREMLExpectation.o
In file included from omxGREMLExpectation.cpp:17:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxGREMLExpectation.cpp:17:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxGREMLExpectation.cpp:17:
In file included from ./omxExpectation.h:36:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxGREMLfitfunction.cpp -o omxGREMLfitfunction.o
In file included from omxGREMLfitfunction.cpp:17:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxGREMLfitfunction.cpp:17:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxGREMLfitfunction.cpp:17:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxHessianCalculation.cpp -o omxHessianCalculation.o
In file included from omxHessianCalculation.cpp:29:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxHessianCalculation.cpp:29:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxHessianCalculation.cpp:30:
In file included from ./glue.h:23:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxImportFrontendState.cpp -o omxImportFrontendState.o
In file included from omxImportFrontendState.cpp:20:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxImportFrontendState.cpp:20:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxImportFrontendState.cpp:21:
In file included from ./glue.h:23:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxLISRELExpectation.cpp -o omxLISRELExpectation.o
In file included from omxLISRELExpectation.cpp:17:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxLISRELExpectation.cpp:17:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxLISRELExpectation.cpp:17:
In file included from ./omxExpectation.h:36:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
omxLISRELExpectation.cpp:22:1: warning: 'omxLISRELExpectation' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   22 | class omxLISRELExpectation : public MVNExpectation {
      | ^
./omxLISRELExpectation.h:21:43: note: did you mean class here?
   21 | void omxCalculateLISRELCovarianceAndMeans(struct omxLISRELExpectation* oro);
      |                                           ^~~~~~
      |                                           class
5 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxMLFitFunction.cpp -o omxMLFitFunction.o
In file included from omxMLFitFunction.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxMLFitFunction.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxMLFitFunction.cpp:21:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/mix.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/fwd/fun.hpp:78:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/fwd/fun/log_mix.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
      | ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
   45 | class ops_partials_edge;
      | ^~~~~
      | struct
In file included from omxMLFitFunction.cpp:21:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/mix.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:201:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from omxMLFitFunction.cpp:21:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/mix.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:201:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from omxMLFitFunction.cpp:21:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/mix.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:201:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from omxMLFitFunction.cpp:21:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/mix.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:201:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from omxMLFitFunction.cpp:21:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/mix.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:201:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from omxMLFitFunction.cpp:21:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/mix.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:201:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from omxMLFitFunction.cpp:21:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/mix.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:201:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from omxMLFitFunction.cpp:21:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/mix.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:201:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from omxMLFitFunction.cpp:27:
In file included from ./omxExpectation.h:36:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
In file included from omxMLFitFunction.cpp:28:
In file included from ./RAMInternal.h:12:
./path.h:244:10: warning: unused variable 'symVec' [-Wunused-variable]
  244 |                         auto &symVec = symSolver.eigenvectors();
      |                               ^~~~~~
./path.h:393:11: warning: unused variable 'symVec' [-Wunused-variable]
  393 |     auto &symVec = symSolver.eigenvectors();
      |           ^~~~~~
In file included from omxMLFitFunction.cpp:21:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/mix.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/fwd/fun.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/fwd/fun/grad_inc_beta.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/fwd/fun/inc_beta.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/grad_reg_inc_beta.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/beta.hpp:1721:
/data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
/data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here
  304 |       temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
      |       ^
/data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  615 |                x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  992 |    rx = detail::ibeta_inv_imp(
      |                 ^
/data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
 1023 |    return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol);
      |           ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
   32 |   return boost::math::ibeta_inv(a, b, p, boost_policy_t<>());
      |                       ^
omxMLFitFunction.cpp:33:21: warning: unused variable 'MIN_VARIANCE' [-Wunused-const-variable]
   33 | static const double MIN_VARIANCE = 1e-6;
      |                     ^~~~~~~~~~~~
17 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxMatrix.cpp -o omxMatrix.o
In file included from omxMatrix.cpp:28:
In file included from ./omxMatrix.h:36:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxMatrix.cpp:28:
In file included from ./omxMatrix.h:36:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxMatrix.cpp:30:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxNLopt.cpp -o omxNLopt.o
In file included from omxNLopt.cpp:4:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxNLopt.cpp:4:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxNLopt.cpp:5:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxNPSOLSpecific.cpp -o omxNPSOLSpecific.o
In file included from omxNPSOLSpecific.cpp:19:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxNPSOLSpecific.cpp:19:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxNPSOLSpecific.cpp:19:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxNormalExpectation.cpp -o omxNormalExpectation.o
In file included from omxNormalExpectation.cpp:17:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxNormalExpectation.cpp:17:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxNormalExpectation.cpp:17:
In file included from ./omxExpectation.h:36:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxRAMExpectation.cpp -o omxRAMExpectation.o
In file included from omxRAMExpectation.cpp:17:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxRAMExpectation.cpp:17:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxRAMExpectation.cpp:17:
In file included from ./omxExpectation.h:36:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
In file included from omxRAMExpectation.cpp:19:
In file included from ./RAMInternal.h:12:
./path.h:244:10: warning: unused variable 'symVec' [-Wunused-variable]
  244 |                         auto &symVec = symSolver.eigenvectors();
      |                               ^~~~~~
./path.h:393:11: warning: unused variable 'symVec' [-Wunused-variable]
  393 |     auto &symVec = symSolver.eigenvectors();
      |           ^~~~~~
omxRAMExpectation.cpp:967:3: warning: class 'addrSetup' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
  967 |                 class addrSetup as1;
      |                 ^
./RAMInternal.h:32:9: note: previous use is here
   32 |         struct addrSetup {
      |                ^
omxRAMExpectation.cpp:967:3: note: did you mean struct here?
  967 |                 class addrSetup as1;
      |                 ^~~~~
      |                 struct
7 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxRFitFunction.cpp -o omxRFitFunction.o
In file included from omxRFitFunction.cpp:17:
In file included from ./glue.h:23:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxRFitFunction.cpp:17:
In file included from ./glue.h:23:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxRFitFunction.cpp:17:
In file included from ./glue.h:23:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxRowFitFunction.cpp -o omxRowFitFunction.o
In file included from omxRowFitFunction.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxRowFitFunction.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxRowFitFunction.cpp:19:
In file included from ./omxData.h:53:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxState.cpp -o omxState.o
In file included from omxState.cpp:22:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxState.cpp:22:
In file included from ./omxState.h:31:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxState.cpp:22:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxStateSpaceExpectation.cpp -o omxStateSpaceExpectation.o
In file included from omxStateSpaceExpectation.cpp:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxStateSpaceExpectation.cpp:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxStateSpaceExpectation.cpp:39:
In file included from ./omxExpectation.h:36:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxSymbolTable.cpp -o omxSymbolTable.o
In file included from omxSymbolTable.cpp:1:
In file included from ./omxSymbolTable.h:4:
In file included from ./omxMatrix.h:36:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxSymbolTable.cpp:1:
In file included from ./omxSymbolTable.h:4:
In file included from ./omxMatrix.h:36:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxSymbolTable.cpp:2:
In file included from ./AlgebraFunctions.h:33:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c omxWLSFitFunction.cpp -o omxWLSFitFunction.o
In file included from omxWLSFitFunction.cpp:17:
In file included from ./omxData.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from omxWLSFitFunction.cpp:17:
In file included from ./omxData.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from omxWLSFitFunction.cpp:17:
In file included from ./omxData.h:53:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c optimize.c -o optimize.o
optimize.c:350:10: warning: variable 'ni' set but not used [-Wunused-but-set-variable]
  350 |      int ni;
      |          ^
optimize.c:35:15: warning: unused function 'f_bound' [-Wunused-function]
   35 | static double f_bound(int n, const double *x, void *data_)
      |               ^~~~~~~
optimize.c:51:15: warning: unused function 'f_noderiv' [-Wunused-function]
   51 | static double f_noderiv(int n, const double *x, void *data_)
      |               ^~~~~~~~~
optimize.c:57:15: warning: unused function 'f_direct' [-Wunused-function]
   57 | static double f_direct(int n, const double *x, int *undefined, void *data_)
      |               ^~~~~~~~
optimize.c:79:21: warning: unused function 'initial_step' [-Wunused-function]
   79 | static nlopt_result initial_step(nlopt_opt opt, const double *x, double *step)
      |                     ^~~~~~~~~~~~
optimize.c:101:12: warning: unused function 'finite_domain' [-Wunused-function]
  101 | static int finite_domain(unsigned n, const double *lb, const double *ub)
      |            ^~~~~~~~~~~~~
6 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c options.c -o options.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c penalty.cpp -o penalty.o
In file included from penalty.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from penalty.cpp:17:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from penalty.cpp:18:
In file included from ./Compute.h:23:
In file included from ./glue.h:23:
In file included from ./omxState.h:48:
In file included from ./omxExpectation.h:37:
In file included from ./omxData.h:54:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c povRAM.cpp -o povRAM.o
In file included from povRAM.cpp:2:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from povRAM.cpp:2:
In file included from ./omxExpectation.h:32:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from povRAM.cpp:2:
In file included from ./omxExpectation.h:36:
In file included from ./omxAlgebra.h:26:
In file included from ./omxState.h:49:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
In file included from povRAM.cpp:3:
./path.h:244:10: warning: unused variable 'symVec' [-Wunused-variable]
  244 |                         auto &symVec = symSolver.eigenvectors();
      |                               ^~~~~~
./path.h:393:11: warning: unused variable 'symVec' [-Wunused-variable]
  393 |     auto &symVec = symSolver.eigenvectors();
      |           ^~~~~~
povRAM.cpp:153:3: warning: extension used [-Wlanguage-extension-token]
  153 |                 typeof(aio->sparse) curProd = aio->sparse;
      |                 ^
7 warnings generated.
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c sadmvn.f -o sadmvn.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c slsqp.c -o slsqp.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp       -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c ssMLFit.cpp -o ssMLFit.o
In file included from ssMLFit.cpp:17:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from ssMLFit.cpp:17:
In file included from ./omxFitFunction.h:33:
In file included from ./omxDefines.h:236:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from ssMLFit.cpp:17:
./omxFitFunction.h:42:1: warning: 'omxFitFunction' defined as a class here but previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   42 | class omxFitFunction {
      | ^
./omxDefines.h:131:9: note: did you mean class here?
  131 | typedef struct omxFitFunction omxFitFunction;
      |         ^~~~~~
      |         class
4 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/rpf/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c stop.c -o stop.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o OpenMx.so Compute.o ComputeGD.o ComputeNM.o ComputeNR.o ComputeSD.o FellnerFitFunction.o MarkovExpectation.o MarkovFF.o asa.o asubnp.o ba81quad.o dmvnorm.o fitMultigroup.o general.o glue.o matlogexp.o matrix.o mvbvn.o nanotimer.o omxAlgebra.o omxAlgebraFitFunction.o omxData.o omxExpectation.o omxExpectationBA81.o omxExportBackendState.o omxFIMLFitFunction.o omxFitFunction.o omxFitFunctionBA81.o omxGREMLExpectation.o omxGREMLfitfunction.o omxHessianCalculation.o omxImportFrontendState.o omxLISRELExpectation.o omxMLFitFunction.o omxMatrix.o omxNLopt.o omxNPSOLSpecific.o omxNormalExpectation.o omxRAMExpectation.o omxRFitFunction.o omxRowFitFunction.o omxState.o omxStateSpaceExpectation.o omxSymbolTable.o omxWLSFitFunction.o optimize.o options.o penalty.o povRAM.o sadmvn.o slsqp.o ssMLFit.o stop.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm -lFortranRuntime -lFortranDecimal -lm
mkdir -p ../inst/debug
cp *.gcno ../inst/debug/
cp: cannot stat '*.gcno': No such file or directory
make[1]: [Makevars:94: save-gcno] Error 1 (ignored)
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/OpenMx/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/OpenMx/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/OpenMx/src'
installing to /data/gannet/ripley/R/packages/tests-clang/OpenMx.Rcheck/00LOCK-OpenMx/00new/OpenMx/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘nrow’ from package ‘base’ in package ‘OpenMx’
Creating a generic function for ‘ncol’ from package ‘base’ in package ‘OpenMx’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OpenMx)