* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/MDMR.Rcheck’
* using R Under development (unstable) (2025-02-28 r87848)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 20.1.0-rc3
    flang version 20.1.0-rc3
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘MDMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MDMR’ version ‘0.5.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MDMR’ can be installed ... [15s/31s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/MDMR-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [22s/37s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘MDMR-Ex.R’ failed
The error most likely occurred in:

> ### Name: MDMR-package
> ### Title: Multivariate Distance Matrix Regression
> ### Aliases: MDMR-package MDMR
> 
> ### ** Examples
> 
> ################################################################
> ## Conducting MDMR on data comprised of independent observations
> ################################################################
> # Source data
> data(mdmrdata)
> 
> # Get distance matrix
> D <- dist(Y.mdmr, method = 'euclidean')
> 
> # Conduct MDMR
> mdmr.res <- mdmr(X = X.mdmr, D = D)
> summary(mdmr.res)
          Statistic Numer.DF Pseudo.R2 Analytic.p.value    
(Omnibus)    0.1602        3    0.1380          < 1e-20 ***
X1           0.0652        1    0.0562          < 1e-13 ***
X2           0.0242        1    0.0208       5.2361e-07 ***
X3           0.0751        1    0.0648          < 1e-14 ***
---
Signif. codes:  0 "***" 0.001 "**" 0.01 "*" 0.05 "." 0.1 " " 1> 
> ################################################################
> ## Conducting MDMR on data comprised of dependent observations
> ################################################################
> # Source data
> data("clustmdmrdata")
> 
> # Get distance matrix
> D <- dist(Y.clust)
> 
> # Conduct mixed-MDMR
> mixed.res <- mixed.mdmr(~ x1 + x2 + (x1 + x2 | grp),
+                         data = X.clust, D = D)
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
  convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Error in CompQuadForm::davies(tilde.l[k], lambda = lambda, h = rep(df,  : 
  NA/NaN/Inf in foreign function call (arg 6)
Calls: mixed.mdmr ... unlist -> <Anonymous> -> lapply -> FUN -> <Anonymous>
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [12s/21s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR