* installing *source* package ‘MAINT.Data’ ...
** package ‘MAINT.Data’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/MAINT.Data/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c AdMatAlgFoo.cpp -o AdMatAlgFoo.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c AuxFoo.cpp -o AuxFoo.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c CEMGauss.cpp -o CEMGauss.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c MDataGaussLogLik.cpp -o MDataGaussLogLik.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c MinMaxEgval.cpp -o MinMaxEgval.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c RestCovGrad.cpp -o RestCovGrad.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c fasttle.cpp -o fasttle.o
In file included from MDataGaussLogLik.cpp:5:
./msnCP_dev.h:41:43: warning: left operand of comma operator has no effect [-Wunused-value]
41 | for (int c=0;c<n;c++) Rprintf("%f ",M[r,c]);
| ^
MDataGaussLogLik.cpp:185:28: warning: unused variable 'lnk2' [-Wunused-variable]
185 | double detj,lndetj,dev,lnk2;
| ^~~~
In file included from CEMGauss.cpp:10:
./msnCP_dev.h:41:43: warning: left operand of comma operator has no effect [-Wunused-value]
41 | for (int c=0;c<n;c++) Rprintf("%f ",M[r,c]);
| ^
CEMGauss.cpp:93:19: warning: variable 'zpin' set but not used [-Wunused-but-set-variable]
93 | NumericMatrix *zpin=&z0,*zpout=&z1;
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c fulltle.cpp -o fulltle.o
2 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c msnCP_Aux.cpp -o msnCP_Aux.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c msnCP_dev.cpp -o msnCP_dev.o
MinMaxEgval.cpp:49:12: warning: variable 'corr' set but not used [-Wunused-but-set-variable]
49 | double corr,corr2,Rdet,Rtr,bind;
| ^
2 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c msnCP_dev_RIntf.cpp -o msnCP_dev_RIntf.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c msnCP_dev_grad.cpp -o msnCP_dev_grad.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c registerDynamicSimbol.cpp -o registerDynamicSimbol.o
In file included from msnCP_dev.cpp:1:
./msnCP_dev.h:41:43: warning: left operand of comma operator has no effect [-Wunused-value]
41 | for (int c=0;c<n;c++) Rprintf("%f ",M[r,c]);
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c sampleint.cpp -o sampleint.o
In file included from msnCP_dev_RIntf.cpp:1:
./msnCP_dev.h:41:43: warning: left operand of comma operator has no effect [-Wunused-value]
41 | for (int c=0;c<n;c++) Rprintf("%f ",M[r,c]);
| ^
1 warning generated.
1 warning generated.
In file included from msnCP_dev_grad.cpp:5:
./msnCP_dev.h:41:43: warning: left operand of comma operator has no effect [-Wunused-value]
41 | for (int c=0;c<n;c++) Rprintf("%f ",M[r,c]);
| ^
In file included from registerDynamicSimbol.cpp:2:
./msnCP_dev.h:41:43: warning: left operand of comma operator has no effect [-Wunused-value]
41 | for (int c=0;c<n;c++) Rprintf("%f ",M[r,c]);
| ^
1 warning generated.
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o MAINT.Data.so AdMatAlgFoo.o AuxFoo.o CEMGauss.o MDataGaussLogLik.o MinMaxEgval.o RestCovGrad.o fasttle.o fulltle.o msnCP_Aux.o msnCP_dev.o msnCP_dev_RIntf.o msnCP_dev_grad.o registerDynamicSimbol.o sampleint.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/MAINT.Data/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/MAINT.Data/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/MAINT.Data/src'
installing to /data/gannet/ripley/R/packages/tests-clang/MAINT.Data.Rcheck/00LOCK-MAINT.Data/00new/MAINT.Data/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘rbind’ in package ‘MAINT.Data’
Creating a new generic function for ‘cbind’ in package ‘MAINT.Data’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MAINT.Data)