* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/IsoriX.Rcheck’
* using R Under development (unstable) (2025-02-28 r87848)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 20.1.0-rc3
    flang version 20.1.0-rc3
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘IsoriX/DESCRIPTION’ ... OK
* this is package ‘IsoriX’ version ‘0.9.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IsoriX’ can be installed ... [67s/184s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/IsoriX-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calibfit.R’ ‘isofind.R’ ‘prepsources.R’ ‘serialize.R’
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [18s/21s] OK
* checking whether the package can be loaded with stated dependencies ... [19s/30s] OK
* checking whether the package can be unloaded cleanly ... [19s/51s] OK
* checking whether the namespace can be loaded with stated dependencies ... [17s/27s] OK
* checking whether the namespace can be unloaded cleanly ... [17s/38s] OK
* checking loading without being on the library search path ... [18s/38s] OK
* checking whether startup messages can be suppressed ... [18s/27s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [91s/146s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [27s/33s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [30m/37m] ERROR
  Running ‘local_tests.R’
  Running ‘spelling.R’
  Running ‘testthat.R’ [30m/37m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(IsoriX)
  
   IsoriX version 0.9.3 is now loaded
  
   Type:
     * `?IsoriX` for a very short description
     * `browseURL('https://bookdown.org/content/782/')` for a longer (online) documentation
     * `help(package = 'IsoriX', help_type = 'html')` for a list of the package objects and help files
     * `citation('IsoriX')` for how to cite IsoriX (i.e. the papers you should read)
     * `news(package = 'IsoriX')` for info on changed between versions of IsoriX
  
   Please join the mailing list 'https://groups.google.com/g/IsoriX'
   for help, news and discussions about IsoriX
  
  
  Attaching package: 'IsoriX'
  
  The following objects are masked from 'package:graphics':
  
      plot, points
  
  The following object is masked from 'package:base':
  
      plot
  
  > 
  > test_check("IsoriX")
* checking PDF version of manual ... [10s/14s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE