* installing *source* package ‘IntegratedMRF’ ...
** package ‘IntegratedMRF’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/IntegratedMRF/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c rcpp_hello.cpp -o rcpp_hello.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c registerDynamicSymbol.cpp -o registerDynamicSymbol.o
rcpp_hello.cpp:118:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
118 | for (int i = 0; i<yhat_nrow; ++i)
| ^
rcpp_hello.cpp:112:9: note: previous statement is here
112 | for (int i = 0; i<yhat_nrow; ++i)
| ^
rcpp_hello.cpp:125:15: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
125 | NumericMatrix mult2(nrow,nrow);
| ^
rcpp_hello.cpp:119:13: note: previous statement is here
119 | for (int j = 0; j<Inv_Cov_Y.ncol(); ++j)
| ^
rcpp_hello.cpp:136:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
136 | for (int i = 0; i<r1; ++i)
| ^
rcpp_hello.cpp:130:9: note: previous statement is here
130 | for (int i = 0; i<r1; ++i)
| ^
rcpp_hello.cpp:143:15: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
143 | for (int kk = 0; kk<nrow; kk++) {
| ^
rcpp_hello.cpp:137:13: note: previous statement is here
137 | for (int j = 0; j<c2; ++j)
| ^
rcpp_hello.cpp:185:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
185 | for (int i = 0; i<yhat_nrow; ++i)
| ^
rcpp_hello.cpp:179:9: note: previous statement is here
179 | for (int i = 0; i<yhat_nrow; ++i)
| ^
rcpp_hello.cpp:192:15: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
192 | NumericMatrix mult2(nrow,nrow);
| ^
rcpp_hello.cpp:186:13: note: previous statement is here
186 | for (int j = 0; j<Inv_Cov_Y.ncol(); ++j)
| ^
rcpp_hello.cpp:203:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
203 | for (int i = 0; i<r1; ++i)
| ^
rcpp_hello.cpp:197:9: note: previous statement is here
197 | for (int i = 0; i<r1; ++i)
| ^
rcpp_hello.cpp:210:15: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
210 | for (int kk = 0; kk<nrow; kk++) {
| ^
rcpp_hello.cpp:204:13: note: previous statement is here
204 | for (int j = 0; j<c2; ++j)
| ^
rcpp_hello.cpp:311:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
311 | for(int i=0; i<yhat_nrow; ++i)
| ^
rcpp_hello.cpp:305:5: note: previous statement is here
305 | for(int i=0; i<yhat_nrow; ++i)
| ^
rcpp_hello.cpp:318:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
318 | NumericMatrix mult2(nrow,nrow);
| ^
rcpp_hello.cpp:312:9: note: previous statement is here
312 | for(int j=0; j<Inv_Cov_Y.ncol(); ++j)
| ^
rcpp_hello.cpp:329:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
329 | for(int i=0; i<r1; ++i)
| ^
rcpp_hello.cpp:323:5: note: previous statement is here
323 | for(int i=0; i<r1; ++i)
| ^
rcpp_hello.cpp:336:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
336 | for(int kk=0; kk<nrow; kk++){
| ^
rcpp_hello.cpp:330:9: note: previous statement is here
330 | for(int j=0; j<c2; ++j)
| ^
12 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o IntegratedMRF.so RcppExports.o rcpp_hello.o registerDynamicSymbol.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/IntegratedMRF/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/IntegratedMRF/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/IntegratedMRF/src'
installing to /data/gannet/ripley/R/packages/tests-clang/IntegratedMRF.Rcheck/00LOCK-IntegratedMRF/00new/IntegratedMRF/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (IntegratedMRF)