* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/GeoTox.Rcheck’
* using R Under development (unstable) (2025-02-19 r87749)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 20.1.0-rc2
    flang version 20.1.0-rc2
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘GeoTox/DESCRIPTION’ ... OK
* this is package ‘GeoTox’ version ‘0.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GeoTox’ can be installed ... [10s/16s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/GeoTox-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/20s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [96s/119s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [31s/35s] OK
  Running ‘testthat.R’ [30s/35s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [30m/36m] ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26302 bytes
Input file size = 26416 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20429
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20429

Output IDAT size = 20429 bytes (5873 bytes decrease)
Output file size = 20507 bytes (5909 bytes = 22.37% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-2.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30020 bytes
Input file size = 30134 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25906
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25906

Output IDAT size = 25906 bytes (4114 bytes decrease)
Output file size = 25984 bytes (4150 bytes = 13.77% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-3.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37871 bytes
Input file size = 37997 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31676
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31676

Output IDAT size = 31676 bytes (6195 bytes decrease)
Output file size = 31754 bytes (6243 bytes = 16.43% decrease)

--- re-building ‘package_data.Rmd’ using rmarkdown
--- finished re-building ‘package_data.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [8s/11s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR