• using R Under development (unstable) (2024-11-08 r87306)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 19.1.3     flang-new version 19.1.3
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘CommKern/DESCRIPTION’ ... OK
• this is package ‘CommKern’ version ‘1.0.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘CommKern’ can be installed ... [6s/11s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/17s] OK
• checking Rd files ... NOTE checkRd: (-1) count_pairs.Rd:19-20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) count_pairs.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) count_pairs.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) count_pairs.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) count_pairs.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) entropy.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) entropy.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) entropy.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) entropy.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) score_log_nonparam.Rd:36: Lost braces; missing escapes or markup?     36 | {0, 1}.        | ^ checkRd: (-1) score_log_semiparam.Rd:40: Lost braces; missing escapes or markup?     40 | values in {0, 1}.        | ^ checkRd: (-1) sort_pairs.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sort_pairs.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sort_pairs.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sort_pairs.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sort_pairs.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sort_pairs.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [18s/35s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [18s/35s] OK   Running ‘test-NMI.R’   Running ‘test-adj_RI.R’   Running ‘test-community_allegiance.R’   Running ‘test-compute_mod_matrix.R’   Running ‘test-compute_multimodal_mod.R’   Running ‘test-consensus_similarity.R’   Running ‘test-count_pairs.R’   Running ‘test-degree.R’   Running ‘test-entropy.R’   Running ‘test-ext_distance.R’   Running ‘test-ham_distance.R’   Running ‘test-hms.R’   Running ‘test-kernel.R’   Running ‘test-matrix_to_df.R’   Running ‘test-purity.R’   Running ‘test-score_cont_nonparam.R’   Running ‘test-score_cont_semiparam.R’   Running ‘test-score_log_nonparam.R’   Running ‘test-score_log_semiparam.R’   Running ‘test-sort_pairs.R’   Running ‘test-subset_matrix_to_df.R’   Running ‘test-trace.R’   Running ‘test-up_low.R’   Running ‘test-zrand.R’
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [68s/164s] OK
• checking PDF version of manual ... [8s/33s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE