• using R Under development (unstable) (2025-02-15 r87725)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 20.1.0-rc2     flang version 20.1.0-rc2
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘CloneSeeker/DESCRIPTION’ ... OK
• this is package ‘CloneSeeker’ version ‘1.0.11’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘CloneSeeker’ can be installed ... [14s/29s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/38s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking R/sysdata.rda ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [11s/20s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [224s/340s] NOTE   Running ‘test01-Simplex.R’   Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK   Running ‘test02-WV.R’   Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK   Running ‘test03-simulate.R’ [57s/96s]   Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...213c213 < 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029188 3rd Qu.:0.5005 --- > 3rd Qu.:14.000 3rd Qu.:265.75 3rd Qu.: 0.0029187 3rd Qu.:0.5005   Running ‘test04-algorithm.R’ [161s/235s]   Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...177c177 < Max. :2.002 Max. :0.9989221 Max. :2747 --- > Max. :2.002 Max. :0.9989222 Max. :2747 238c238 < Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5902 --- > Mean : 7.286 Mean :184.3 Mean : 0.03329 Mean :0.5903 244c244 < Median :1.0415 Median :1.0144845 Median :1352 --- > Median :1.0415 Median :1.0144844 Median :1352
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [18s/22s] OK
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE