* installing *source* package ‘COveR’ ...
** package ‘COveR’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... /usr/local/clang19/bin/clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether /usr/local/clang19/bin/clang accepts -g... yes
checking for /usr/local/clang19/bin/clang option to enable C11 features... none needed
checking for gsl-config... /usr/bin/gsl-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘clang version 19.1.2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/COveR/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I.  -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c COveR-init.c -o COveR-init.o
In file included from COveR-init.c:2:
./icmeans/R_icmeans.h:27:12: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   27 |   unsigned n, x, y, z, nc, ns, d, im, i, j;
      |            ^
./icmeans/R_icmeans.h:27:18: warning: variable 'y' set but not used [-Wunused-but-set-variable]
   27 |   unsigned n, x, y, z, nc, ns, d, im, i, j;
      |                  ^
In file included from COveR-init.c:3:
./ikmeans/R_ikmeans.h:26:12: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   26 |   unsigned n, x, y, z, nc, ns, d, im, i, j;
      |            ^
./ikmeans/R_ikmeans.h:26:18: warning: variable 'y' set but not used [-Wunused-but-set-variable]
   26 |   unsigned n, x, y, z, nc, ns, d, im, i, j;
      |                  ^
In file included from COveR-init.c:4:
./ineokm/R_ineokm.h:27:12: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   27 |   unsigned n, x, y, z, nc, ns, im, i, j;
      |            ^
./ineokm/R_ineokm.h:27:18: warning: variable 'y' set but not used [-Wunused-but-set-variable]
   27 |   unsigned n, x, y, z, nc, ns, im, i, j;
      |                  ^
In file included from COveR-init.c:5:
./iokm/R_iokm.h:28:12: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   28 |   unsigned n, x, y, z, nc, ns, dist, algo, up, im, i, j;
      |            ^
./iokm/R_iokm.h:28:18: warning: variable 'y' set but not used [-Wunused-but-set-variable]
   28 |   unsigned n, x, y, z, nc, ns, dist, algo, up, im, i, j;
      |                  ^
In file included from COveR-init.c:8:
./neokm/R_neokm.h:26:12: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   26 |   unsigned n, x, y, nc, ns, im, i, j;
      |            ^
In file included from COveR-init.c:9:
./okm/okm.h:195:21: warning: variable 'ret2' set but not used [-Wunused-but-set-variable]
  195 |   double ret = 0.0, ret2 = 0.0;
      |                     ^
./okm/okm.h:308:10: warning: unused variable 'tmp' [-Wunused-variable]
  308 |   double tmp;
      |          ^~~
./okm/okm.h:309:18: warning: unused variable 'res2' [-Wunused-variable]
  309 |   double res[p], res2[p];
      |                  ^~~~
./okm/okm.h:310:7: warning: unused variable 'idm' [-Wunused-variable]
  310 |   int idm, u = 0;
      |       ^~~
./okm/okm.h:497:10: warning: variable 'dwss' set but not used [-Wunused-but-set-variable]
  497 |   double dwss;
      |          ^
In file included from COveR-init.c:10:
./r1okm/R_r1okm.h:25:12: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   25 |   unsigned n, x, y, nc, ns, im, i, j;
      |            ^
In file included from COveR-init.c:11:
./r2okm/R_r2okm.h:25:12: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   25 |   unsigned n, x, y, nc, ns, im, i, j;
      |            ^
16 warnings generated.
/usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o COveR.so COveR-init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/COveR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/COveR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/COveR/src'
installing to /data/gannet/ripley/R/packages/tests-clang/COveR.Rcheck/00LOCK-COveR/00new/COveR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (COveR)