* installing *source* package ‘ActiSleep’ ...
** package ‘ActiSleep’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ActiSleep/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c BinNegative.cpp -o BinNegative.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c CallSegmentor.cpp -o CallSegmentor.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Exp.cpp -o Exp.o
In file included from CallSegmentor.cpp:2:
./Segmentor.h:259:5: warning: delete called on non-final 'Poisson' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
259 | delete Aux;
| ^
./Segmentor.h:184:4: note: in instantiation of member function 'Segmentor<Poisson, Poisson, int>::Initialize' requested here
184 | Initialize();
| ^
./Segmentor.h:152:2: note: in instantiation of member function 'Segmentor<Poisson, Poisson, int>::Initialize' requested here
152 | Initialize(yc, Kc, Mg, Mgam, MS);
| ^
CallSegmentor.cpp:34:39: note: in instantiation of member function 'Segmentor<Poisson, Poisson, int>::Segmentor' requested here
34 | Segmentor<Poisson, Poisson, int> TheSegmentor(LesObservations, K, MBg, MBgam, &S);
| ^
In file included from CallSegmentor.cpp:2:
./Segmentor.h:259:5: warning: delete called on non-final 'Exponential' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
259 | delete Aux;
| ^
./Segmentor.h:184:4: note: in instantiation of member function 'Segmentor<Exponential, Exponential, double>::Initialize' requested here
184 | Initialize();
| ^
./Segmentor.h:152:2: note: in instantiation of member function 'Segmentor<Exponential, Exponential, double>::Initialize' requested here
152 | Initialize(yc, Kc, Mg, Mgam, MS);
| ^
CallSegmentor.cpp:73:50: note: in instantiation of member function 'Segmentor<Exponential, Exponential, double>::Segmentor' requested here
73 | Segmentor<Exponential, Exponential, double> TheSegmentor(LesObservations, K, MBg, MBgam, &S);
| ^
In file included from CallSegmentor.cpp:2:
./Segmentor.h:259:5: warning: delete called on non-final 'BinNegative' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
259 | delete Aux;
| ^
./Segmentor.h:184:4: note: in instantiation of member function 'Segmentor<BinNegative, BinNegative, int>::Initialize' requested here
184 | Initialize();
| ^
./Segmentor.h:152:2: note: in instantiation of member function 'Segmentor<BinNegative, BinNegative, int>::Initialize' requested here
152 | Initialize(yc, Kc, Mg, Mgam, MS);
| ^
CallSegmentor.cpp:205:47: note: in instantiation of member function 'Segmentor<BinNegative, BinNegative, int>::Segmentor' requested here
205 | Segmentor<BinNegative, BinNegative, int> TheSegmentor(LesObservations, K, MBg, MBgam, &S);
| ^
In file included from CallSegmentor.cpp:2:
./Segmentor.h:259:5: warning: delete called on non-final 'Trinome' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
259 | delete Aux;
| ^
./Segmentor.h:184:4: note: in instantiation of member function 'Segmentor<Trinome, Trinome, double>::Initialize' requested here
184 | Initialize();
| ^
./Segmentor.h:152:2: note: in instantiation of member function 'Segmentor<Trinome, Trinome, double>::Initialize' requested here
152 | Initialize(yc, Kc, Mg, Mgam, MS);
| ^
CallSegmentor.cpp:288:42: note: in instantiation of member function 'Segmentor<Trinome, Trinome, double>::Segmentor' requested here
288 | Segmentor<Trinome, Trinome, double> TheSegmentor(LesObservations, K, MBg, MBgam, &S);
| ^
In file included from CallSegmentor.cpp:2:
./Segmentor.h:259:5: warning: delete called on non-final 'Variance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
259 | delete Aux;
| ^
./Segmentor.h:184:4: note: in instantiation of member function 'Segmentor<Variance, Variance, double>::Initialize' requested here
184 | Initialize();
| ^
./Segmentor.h:152:2: note: in instantiation of member function 'Segmentor<Variance, Variance, double>::Initialize' requested here
152 | Initialize(yc, Kc, Mg, Mgam, MS);
| ^
CallSegmentor.cpp:369:44: note: in instantiation of member function 'Segmentor<Variance, Variance, double>::Segmentor' requested here
369 | Segmentor<Variance, Variance, double> TheSegmentor(LesObservations, K, MVg, MVgam, &S);
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Function.cpp -o Function.o
Exp.cpp:102:6: warning: add explicit braces to avoid dangling else [-Wdangling-else]
102 | else if ((*this)(Q.GetRight()) > (*this)(Q.GetLeft()))
| ^
1 warning generated.
5 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c GeneralFunctions.cpp -o GeneralFunctions.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c MyVector.cpp -o MyVector.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Observations.cpp -o Observations.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Poisson.cpp -o Poisson.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c PrunedSeg.cc -o PrunedSeg.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Segment.cpp -o Segment.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Segmentor.cpp -o Segmentor.o
Segment.cpp:247:2: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation]
247 | Segment *T = (*this).Intersect(K);
| ^
Segment.cpp:244:3: note: previous statement is here
244 | if (Other.GetRight() < PLUS_INFINITY)
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Sets.cpp -o Sets.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Trinome.cpp -o Trinome.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Variance.cpp -o Variance.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c init.cpp -o init.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o ActiSleep.so BinNegative.o CallSegmentor.o Exp.o Function.o GeneralFunctions.o MyVector.o Observations.o Poisson.o PrunedSeg.o Segment.o Segmentor.o Sets.o Trinome.o Variance.o init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ActiSleep/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ActiSleep/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ActiSleep/src'
installing to /data/gannet/ripley/R/packages/tests-clang/ActiSleep.Rcheck/00LOCK-ActiSleep/00new/ActiSleep/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ActiSleep)