- using R Under development (unstable) (2025-02-19 r87749)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 20.1.0-rc2
flang version 20.1.0-rc2
- running under: Fedora Linux 40 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘ARTool/DESCRIPTION’ ... OK
- this is package ‘ARTool’ version ‘0.11.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘ARTool’ can be installed ... [19s/26s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [25s/35s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [35s/50s] ERROR
Running ‘testthat.R’ [35s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ARTool)
>
> test_check("ARTool")
[ FAIL 8 | WARN 56 | SKIP 0 | PASS 145 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test.anova.art.R:50:5'): anova.art of Higgins1990Table5 matches results of the original ARTool ──
`a` not equal to ref[-2].
Component "F": Mean relative difference: 0.7174749
Component "Pr(>F)": Mean relative difference: 0.9944212
── Failure ('test.art.R:66:5'): art allows models with missing data in the grouping terms ──
anova(m)$F not equal to 0.6862745.
1/1 mismatches
[1] 0.166 - 0.686 == -0.52
── Failure ('test.art.con.R:75:5'): art.con returns same result as ARTool.exe + JMP: with grouping term, two-factor model ──
summary(art.con(m, "Moisture"))$t not equal to c(...).
6/6 mismatches (average diff: 3.01)
[1] -1.783 - -5.61 == 3.82
[2] -2.607 - -8.20 == 5.59
[3] -1.172 - -3.68 == 2.51
[4] -0.824 - -2.59 == 1.77
[5] 0.612 - 1.92 == -1.31
[6] 1.436 - 4.51 == -3.08
── Failure ('test.art.con.R:83:5'): art.con returns same result as ARTool.exe + JMP: with grouping term, two-factor model ──
...[[]] not equal to c(-1.107980814, -3.036288461, -5.007904345).
3/3 mismatches (average diff: 0.0131)
[1] -1.11 - -1.11 == -0.0033
[2] -3.02 - -3.04 == 0.0136
[3] -4.99 - -5.01 == 0.0225
── Failure ('test.art.con.R:96:5'): art.con returns same result as ARTool.exe + JMP: with grouping term, three-factor model ──
summary(art.con(m, "A"))$t not equal to c(-16.98).
1/1 mismatches
[1] -13.5 - -17 == 3.5
── Failure ('test.art.con.R:104:5'): art.con returns same result as ARTool.exe + JMP: with grouping term, three-factor model ──
...[[]] not equal to c(-0.072115146, -14.74754746, -10.13217808).
3/3 mismatches (average diff: 1.88)
[1] -0.0558 - -0.0721 == 0.0163
[2] -11.4202 - -14.7475 == 3.3274
[3] -7.8461 - -10.1322 == 2.2860
── Failure ('test.art.con.R:112:5'): art.con returns same result as ARTool.exe + JMP: with grouping term, three-factor model ──
...[[]] not equal to c(-8.041788515, -8.041788515, -7.835588809).
3/3 mismatches (average diff: 2.98)
[1] -5.04 - -8.04 == 3.00
[2] -5.04 - -8.04 == 3.00
[3] -4.91 - -7.84 == 2.92
── Failure ('test.artlm.R:32:5'): artlm returns models whose data can be recovered by emmeans ──
summary(pairs(emmeans::emmeans(artlm(m, "Moisture"), "Moisture")))$t not equal to c(-5.60684, -8.19773, -3.68392, -2.59089, 1.92292, 4.51381).
6/6 mismatches (average diff: 3.01)
[1] -1.783 - -5.61 == 3.82
[2] -2.607 - -8.20 == 5.59
[3] -1.172 - -3.68 == 2.51
[4] -0.824 - -2.59 == 1.77
[5] 0.612 - 1.92 == -1.31
[6] 1.436 - 4.51 == -3.08
[ FAIL 8 | WARN 56 | SKIP 0 | PASS 145 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [33s/50s] OK
- checking PDF version of manual ... [9s/14s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR