* installing *source* package ‘APIS’ ...
** package ‘APIS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/APIS/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c APIS_init_Recom.c -o APIS_init_Recom.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c calculate_likelihood.c -o calculate_likelihood.o
calculate_likelihood.c:503:25: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
  503 |           if ((allele_A == 0)) {
      |                ~~~~~~~~~^~~~
calculate_likelihood.c:503:25: note: remove extraneous parentheses around the comparison to silence this warning
  503 |           if ((allele_A == 0)) {
      |               ~         ^   ~
calculate_likelihood.c:503:25: note: use '=' to turn this equality comparison into an assignment
  503 |           if ((allele_A == 0)) {
      |                         ^~
      |                         =
calculate_likelihood.c:607:25: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
  607 |           if ((allele_A == 0)) {
      |                ~~~~~~~~~^~~~
calculate_likelihood.c:607:25: note: remove extraneous parentheses around the comparison to silence this warning
  607 |           if ((allele_A == 0)) {
      |               ~         ^   ~
calculate_likelihood.c:607:25: note: use '=' to turn this equality comparison into an assignment
  607 |           if ((allele_A == 0)) {
      |                         ^~
      |                         =
2 warnings generated.
/usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o APIS.so APIS_init_Recom.o calculate_likelihood.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/APIS/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/APIS/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/APIS/src'
installing to /data/gannet/ripley/R/packages/tests-clang/APIS.Rcheck/00LOCK-APIS/00new/APIS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (APIS)