- using R Under development (unstable) (2024-06-28 r86850)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.3.0-1) 13.3.0
GNU Fortran (Debian 13.3.0-1) 13.3.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘visualpred/DESCRIPTION’ ... OK
- this is package ‘visualpred’ version ‘0.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘visualpred’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/6s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/5s] OK
- checking whether the package can be unloaded cleanly ... [3s/5s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/5s] OK
- checking loading without being on the library search path ... [3s/5s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [18s/29s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [5s/9s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [73s/102s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Advanced.Rmd’ using knitr
** Processing: figure/unnamed-chunk-2-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 59322 bytes
Input file size = 59484 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49853
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49853
Output IDAT size = 49853 bytes (9469 bytes decrease)
Output file size = 49931 bytes (9553 bytes = 16.06% decrease)
** Processing: figure/unnamed-chunk-3-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 60998 bytes
Input file size = 61160 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50915
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50915
Output IDAT size = 50915 bytes (10083 bytes decrease)
Output file size = 50993 bytes (10167 bytes = 16.62% decrease)
** Processing: figure/unnamed-chunk-4-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 79380 bytes
Input file size = 79566 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69373
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69373
Output IDAT size = 69373 bytes (10007 bytes decrease)
Output file size = 69451 bytes (10115 bytes = 12.71% decrease)
** Processing: figure/unnamed-chunk-5-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 85905 bytes
Input file size = 86103 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310
Output IDAT size = 74310 bytes (11595 bytes decrease)
Output file size = 74388 bytes (11715 bytes = 13.61% decrease)
** Processing: figure/unnamed-chunk-5-2.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 82133 bytes
Input file size = 82331 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526
Output IDAT size = 79526 bytes (2607 bytes decrease)
Output file size = 79604 bytes (2727 bytes = 3.31% decrease)
** Processing: figure/unnamed-chunk-5-3.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54780 bytes
Input file size = 54930 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48985
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48985
Output IDAT size = 48985 bytes (5795 bytes decrease)
Output file size = 49063 bytes (5867 bytes = 10.68% decrease)
** Processing: figure/unnamed-chunk-5-4.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 46664 bytes
Input file size = 46802 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876
Output IDAT size = 44876 bytes (1788 bytes decrease)
Output file size = 44954 bytes (1848 bytes = 3.95% decrease)
--- finished re-building ‘Advanced.Rmd’
--- re-building ‘Basic_example.Rmd’ using knitr
** Processing: figure/unnamed-chunk-3-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55825 bytes
Input file size = 55975 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46598
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46598
Output IDAT size = 46598 bytes (9227 bytes decrease)
Output file size = 46676 bytes (9299 bytes = 16.61% decrease)
** Processing: figure/unnamed-chunk-4-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 57771 bytes
Input file size = 57933 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48944
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48944
Output IDAT size = 48944 bytes (8827 bytes decrease)
Output file size = 49022 bytes (8911 bytes = 15.38% decrease)
** Processing: figure/unnamed-chunk-5-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 75568 bytes
Input file size = 75754 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62169
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62169
Output IDAT size = 62169 bytes (13399 bytes decrease)
Output file size = 62247 bytes (13507 bytes = 17.83% decrease)
** Processing: figure/unnamed-chunk-6-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 76646 bytes
Input file size = 76832 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63958
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63958
Output IDAT size = 63958 bytes (12688 bytes decrease)
Output file size = 64036 bytes (12796 bytes = 16.65% decrease)
** Processing: figure/unnamed-chunk-7-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 53035 bytes
Input file size = 53185 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579
Output IDAT size = 45579 bytes (7456 bytes decrease)
Output file size = 45657 bytes (7528 bytes = 14.15% decrease)
** Processing: figure/unnamed-chunk-8-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51530 bytes
Input file size = 51680 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43381
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43381
Output IDAT size = 43381 bytes (8149 bytes decrease)
Output file size = 43459 bytes (8221 bytes = 15.91% decrease)
** Processing: figure/unnamed-chunk-10-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 115354 bytes
Input file size = 115600 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98863
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98863
Output IDAT size = 98863 bytes (16491 bytes decrease)
Output file size = 98941 bytes (16659 bytes = 14.41% decrease)
** Processing: figure/unnamed-chunk-11-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 173509 bytes
Input file size = 173839 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146962
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146962
Output IDAT size = 146962 bytes (26547 bytes decrease)
Output file size = 147040 bytes (26799 bytes = 15.42% decrease)
** Processing: figure/unnamed-chunk-13-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 122185 bytes
Input file size = 122431 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103793
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103793
Output IDAT size = 103793 bytes (18392 bytes decrease)
Output file size = 103871 bytes (18560 bytes = 15.16% decrease)
** Processing: figure/unnamed-chunk-13-2.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 146262 bytes
Input file size = 146544 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124615
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124615
Output IDAT size = 124615 bytes (21647 bytes decrease)
Output file size = 124693 bytes (21851 bytes = 14.91% decrease)
--- finished re-building ‘Basic_example.Rmd’
--- re-building ‘Comparing.Rmd’ using knitr
Quitting from lines 34-58 [unnamed-chunk-2] (Comparing.Rmd)
Error: processing vignette 'Comparing.Rmd' failed with diagnostics:
Bernoulli requires the response to be numeric in {0,1}
--- failed re-building ‘Comparing.Rmd’
--- re-building ‘Outliers.Rmd’ using knitr
Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps
** Processing: figure/unnamed-chunk-3-1.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 178176 bytes
Input file size = 178506 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145723
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145723
Output IDAT size = 145723 bytes (32453 bytes decrease)
Output file size = 145801 bytes (32705 bytes = 18.32% decrease)
Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps
** Processing: figure/unnamed-chunk-4-1.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 155891 bytes
Input file size = 156197 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133728
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133728
Output IDAT size = 133728 bytes (22163 bytes decrease)
Output file size = 133806 bytes (22391 bytes = 14.34% decrease)
** Processing: figure/unnamed-chunk-4-2.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 133169 bytes
Input file size = 133439 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119319
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119319
Output IDAT size = 119319 bytes (13850 bytes decrease)
Output file size = 119397 bytes (14042 bytes = 10.52% decrease)
** Processing: figure/unnamed-chunk-4-3.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 124628 bytes
Input file size = 124886 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107184
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107184
Output IDAT size = 107184 bytes (17444 bytes decrease)
Output file size = 107262 bytes (17624 bytes = 14.11% decrease)
--- finished re-building ‘Outliers.Rmd’
SUMMARY: processing the following file failed:
‘Comparing.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [6s/13s] OK
- checking HTML version of manual ... [0s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR