- using R Under development (unstable) (2024-06-27 r86848)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.3.0-1) 13.3.0
GNU Fortran (Debian 13.3.0-1) 13.3.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘tagtools/DESCRIPTION’ ... OK
- this is package ‘tagtools’ version ‘0.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘tagtools’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [20s/28s] OK
- checking Rd files ... [1s/1s] NOTE
checkRd: (-1) check_AM.Rd:21-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) check_AM.Rd:26-29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dive_stats.Rd:39: Lost braces; missing escapes or markup?
39 | \code{max} { The maximum depth or altitude}
| ^
checkRd: (-1) dive_stats.Rd:40: Lost braces; missing escapes or markup?
40 | \code{st} {start time of dive (seconds) - from input dive_cues}
| ^
checkRd: (-1) dive_stats.Rd:41: Lost braces; missing escapes or markup?
41 | \code{et} {end time of dive (seconds) - from input dive_cues}
| ^
checkRd: (-1) dive_stats.Rd:42: Lost braces; missing escapes or markup?
42 | \code{dur} { The duration of the excursion}
| ^
checkRd: (-1) dive_stats.Rd:43: Lost braces; missing escapes or markup?
43 | \code{dest_st} { The start time of the destination phase in seconds since start of tag recording (which is also the end time of to phase)}
| ^
checkRd: (-1) dive_stats.Rd:44: Lost braces; missing escapes or markup?
44 | \code{dest_et} { The end time of the destination phase in seconds since start of tag recording (which is also the start of the from phase).}
| ^
checkRd: (-1) dive_stats.Rd:45: Lost braces; missing escapes or markup?
45 | \code{dest_dur} { The duration in seconds of destination phase}
| ^
checkRd: (-1) dive_stats.Rd:46: Lost braces; missing escapes or markup?
46 | \code{to_dur} { The duration in seconds of to phase}
| ^
checkRd: (-1) dive_stats.Rd:47: Lost braces; missing escapes or markup?
47 | \code{from_dur} { The duration in seconds of from phase}
| ^
checkRd: (-1) dive_stats.Rd:48: Lost braces
48 | \code{mean_angle} { If angular=TRUE and X is input, the mean angle for the entire excursion. Values for each phase are also provided in columns \code{mean_to_angle}, \code{mean_dest_angle}, and \code{mean_from_angle}.}
| ^
checkRd: (-1) dive_stats.Rd:49: Lost braces
49 | \code{angle_var} { If angular=TRUE and X is input, the angular variance for the entire excursion. Values for each phase are also provided individually in columns \code{to_angle_var}, \code{dest_angle_var}, and \code{from_angle_var}.}
| ^
checkRd: (-1) dive_stats.Rd:50: Lost braces
50 | \code{mean_aux} { If angular=FALSE and X is input, the mean value of X for the entire excursion. Values for each phase are also provided in columns \code{mean_to_aux}, \code{mean_dest_aux}, and \code{mean_from_aux}.}
| ^
checkRd: (-1) dive_stats.Rd:51: Lost braces
51 | \code{aux_sd} { If angular=FALSE and X is input, the standard deviation of X for the entire excursion. Values for each phase are also provided individually in columns \code{to_aux_sd}, \code{dest_aux_sd}, and \code{from_aux_sd}.}
| ^
checkRd: (-1) make_specgram.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_specgram.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_specgram.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rotation_test.Rd:42-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rotation_test.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rotation_test.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rotation_test.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rotation_test.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rotation_test.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rotation_test.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rotation_test.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [12s/19s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
rotation_test 3.1 0.032 5.237
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [7s/10s] OK
Running ‘testthat.R’ [7s/10s]
- checking PDF version of manual ... [7s/16s] OK
- checking HTML version of manual ... [2s/6s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE