* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck’
* using R Under development (unstable) (2025-02-28 r87848)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc-14 (Debian 14.2.0-16) 14.2.0
GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘susieR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘susieR’ version ‘0.12.35’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘susieR’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/susieR-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
* checking loading without being on the library search path ... [2s/3s] OK
* checking whether startup messages can be suppressed ... [2s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/18s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [21s/25s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [27s/34s] OK
Running ‘testthat.R’ [27s/34s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [59s/80s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘finemapping.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-4-1.png
600x360 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4805 bytes
Input file size = 5660 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4133
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088
Output IDAT size = 4088 bytes (717 bytes decrease)
Output file size = 4166 bytes (1494 bytes = 26.40% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-6-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12685 bytes
Input file size = 12775 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
Output IDAT size = 9965 bytes (2720 bytes decrease)
Output file size = 10043 bytes (2732 bytes = 21.39% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-11-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11978 bytes
Input file size = 12068 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
Output IDAT size = 9574 bytes (2404 bytes decrease)
Output file size = 9652 bytes (2416 bytes = 20.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-13-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12197 bytes
Input file size = 12287 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9652
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9652
Output IDAT size = 9652 bytes (2545 bytes decrease)
Output file size = 9730 bytes (2557 bytes = 20.81% decrease)
--- finished re-building ‘finemapping.Rmd’
--- re-building ‘finemapping_summary_statistics.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-4-1.png
600x360 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4805 bytes
Input file size = 5660 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4133
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088
Output IDAT size = 4088 bytes (717 bytes decrease)
Output file size = 4166 bytes (1494 bytes = 26.40% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-6-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12685 bytes
Input file size = 12775 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
Output IDAT size = 9965 bytes (2720 bytes decrease)
Output file size = 10043 bytes (2732 bytes = 21.39% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-10-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11978 bytes
Input file size = 12068 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
Output IDAT size = 9574 bytes (2404 bytes decrease)
Output file size = 9652 bytes (2416 bytes = 20.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-13-1.png
420x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6821 bytes
Input file size = 7679 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5926
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5909
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5909
Output IDAT size = 5909 bytes (912 bytes decrease)
Output file size = 5987 bytes (1692 bytes = 22.03% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-17-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11420 bytes
Input file size = 11510 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9111
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9111
Output IDAT size = 9111 bytes (2309 bytes decrease)
Output file size = 9189 bytes (2321 bytes = 20.17% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-18-1.png
420x480 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5937 bytes
Input file size = 6792 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5294
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5285
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5285
Output IDAT size = 5285 bytes (652 bytes decrease)
Output file size = 5363 bytes (1429 bytes = 21.04% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-19-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11794 bytes
Input file size = 11884 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9308
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9308
Output IDAT size = 9308 bytes (2486 bytes decrease)
Output file size = 9386 bytes (2498 bytes = 21.02% decrease)
--- finished re-building ‘finemapping_summary_statistics.Rmd’
--- re-building ‘mwe.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/mwe_files/figure-html/unnamed-chunk-1-1.png
540x360 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5229 bytes
Input file size = 6087 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4613
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4603
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4603
Output IDAT size = 4603 bytes (626 bytes decrease)
Output file size = 4681 bytes (1406 bytes = 23.10% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/mwe_files/figure-html/unnamed-chunk-2-1.png
420x420 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7267 bytes
Input file size = 8125 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6275
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6232
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6232
Output IDAT size = 6232 bytes (1035 bytes decrease)
Output file size = 6310 bytes (1815 bytes = 22.34% decrease)
--- finished re-building ‘mwe.Rmd’
--- re-building ‘sparse_susie_eval.Rmd’ using rmarkdown
--- finished re-building ‘sparse_susie_eval.Rmd’
--- re-building ‘susie_refine.Rmd’ using rmarkdown
Quitting from lines 24-33 [unnamed-chunk-1] (susie_refine.Rmd)
Error: processing vignette 'susie_refine.Rmd' failed with diagnostics:
HTTP response code said error [raw.githubusercontent.com]: The requested URL returned error: 503
--- failed re-building ‘susie_refine.Rmd’
--- re-building ‘susie_rss.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/first-comparison-1.png
360x420 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11593 bytes
Input file size = 11683 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9137
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9137
Output IDAT size = 9137 bytes (2456 bytes decrease)
Output file size = 9215 bytes (2468 bytes = 21.12% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/second-comparison-1.png
720x420 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18198 bytes
Input file size = 18300 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14435
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14435
Output IDAT size = 14435 bytes (3763 bytes decrease)
Output file size = 14513 bytes (3787 bytes = 20.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/third-comparison-1.png
360x420 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11191 bytes
Input file size = 11281 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8700
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8700
Output IDAT size = 8700 bytes (2491 bytes decrease)
Output file size = 8778 bytes (2503 bytes = 22.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/fourth-comparison-1.png
360x420 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12532 bytes
Input file size = 12622 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9672
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9672
Output IDAT size = 9672 bytes (2860 bytes decrease)
Output file size = 9750 bytes (2872 bytes = 22.75% decrease)
--- finished re-building ‘susie_rss.Rmd’
--- re-building ‘susierss_diagnostic.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susierss_diagnostic_files/figure-html/unnamed-chunk-2-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12685 bytes
Input file size = 12775 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
Output IDAT size = 9965 bytes (2720 bytes decrease)
Output file size = 10043 bytes (2732 bytes = 21.39% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susierss_diagnostic_files/figure-html/unnamed-chunk-4-1.png
600x360 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8588 bytes
Input file size = 9458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7727
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7727
Output IDAT size = 7727 bytes (861 bytes decrease)
Output file size = 7805 bytes (1653 bytes = 17.48% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susierss_diagnostic_files/figure-html/unnamed-chunk-5-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11978 bytes
Input file size = 12068 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
Output IDAT size = 9574 bytes (2404 bytes decrease)
Output file size = 9652 bytes (2416 bytes = 20.02% decrease)
Quitting from lines 100-114 [unnamed-chunk-6] (susierss_diagnostic.Rmd)
Error: processing vignette 'susierss_diagnostic.Rmd' failed with diagnostics:
HTTP response code said error [raw.githubusercontent.com]: The requested URL returned error: 503
--- failed re-building ‘susierss_diagnostic.Rmd’
--- re-building ‘trend_filtering.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/trend_filtering_files/figure-html/unnamed-chunk-2-1.png
540x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12725 bytes
Input file size = 12815 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10169
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10169
Output IDAT size = 10169 bytes (2556 bytes decrease)
Output file size = 10247 bytes (2568 bytes = 20.04% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/trend_filtering_files/figure-html/unnamed-chunk-3-1.png
540x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14802 bytes
Input file size = 14892 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11627
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11627
Output IDAT size = 11627 bytes (3175 bytes decrease)
Output file size = 11705 bytes (3187 bytes = 21.40% decrease)
--- finished re-building ‘trend_filtering.Rmd’
--- re-building ‘trendfiltering_derivations.Rnw’ using Sweave
--- finished re-building ‘trendfiltering_derivations.Rnw’
SUMMARY: processing the following files failed:
‘susie_refine.Rmd’ ‘susierss_diagnostic.Rmd’
Error: Vignette re-building failed.
Execution halted
* checking PDF version of manual ... [4s/6s] OK
* checking HTML version of manual ... [1s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 ERROR