• using R Under development (unstable) (2025-02-28 r87848)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-16) 14.2.0     GNU Fortran (Debian 14.2.0-16) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘susieR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘susieR’ version ‘0.12.35’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘susieR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking whether startup messages can be suppressed ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [14s/18s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [21s/25s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [27s/34s] OK   Running ‘testthat.R’ [27s/34s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [59s/80s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘finemapping.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-4-1.png 600x360 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4805 bytes Input file size = 5660 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4133   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088 Output IDAT size = 4088 bytes (717 bytes decrease) Output file size = 4166 bytes (1494 bytes = 26.40% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-6-1.png 600x360 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12685 bytes Input file size = 12775 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965 Output IDAT size = 9965 bytes (2720 bytes decrease) Output file size = 10043 bytes (2732 bytes = 21.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-11-1.png 600x360 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11978 bytes Input file size = 12068 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574 Output IDAT size = 9574 bytes (2404 bytes decrease) Output file size = 9652 bytes (2416 bytes = 20.02% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-13-1.png 600x360 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12197 bytes Input file size = 12287 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9652   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9652 Output IDAT size = 9652 bytes (2545 bytes decrease) Output file size = 9730 bytes (2557 bytes = 20.81% decrease) --- finished re-building ‘finemapping.Rmd’ --- re-building ‘finemapping_summary_statistics.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-4-1.png 600x360 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4805 bytes Input file size = 5660 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4133   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088 Output IDAT size = 4088 bytes (717 bytes decrease) Output file size = 4166 bytes (1494 bytes = 26.40% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-6-1.png 600x360 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12685 bytes Input file size = 12775 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965 Output IDAT size = 9965 bytes (2720 bytes decrease) Output file size = 10043 bytes (2732 bytes = 21.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-10-1.png 600x360 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11978 bytes Input file size = 12068 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574 Output IDAT size = 9574 bytes (2404 bytes decrease) Output file size = 9652 bytes (2416 bytes = 20.02% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-13-1.png 420x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6821 bytes Input file size = 7679 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5926   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5909   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5909 Output IDAT size = 5909 bytes (912 bytes decrease) Output file size = 5987 bytes (1692 bytes = 22.03% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-17-1.png 600x360 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11420 bytes Input file size = 11510 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9111   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9111 Output IDAT size = 9111 bytes (2309 bytes decrease) Output file size = 9189 bytes (2321 bytes = 20.17% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-18-1.png 420x480 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5937 bytes Input file size = 6792 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5294   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5285   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5285 Output IDAT size = 5285 bytes (652 bytes decrease) Output file size = 5363 bytes (1429 bytes = 21.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-19-1.png 600x360 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11794 bytes Input file size = 11884 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9308   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9308 Output IDAT size = 9308 bytes (2486 bytes decrease) Output file size = 9386 bytes (2498 bytes = 21.02% decrease) --- finished re-building ‘finemapping_summary_statistics.Rmd’ --- re-building ‘mwe.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/mwe_files/figure-html/unnamed-chunk-1-1.png 540x360 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5229 bytes Input file size = 6087 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4613   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4603   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4603 Output IDAT size = 4603 bytes (626 bytes decrease) Output file size = 4681 bytes (1406 bytes = 23.10% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/mwe_files/figure-html/unnamed-chunk-2-1.png 420x420 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7267 bytes Input file size = 8125 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6275   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6232   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6232 Output IDAT size = 6232 bytes (1035 bytes decrease) Output file size = 6310 bytes (1815 bytes = 22.34% decrease) --- finished re-building ‘mwe.Rmd’ --- re-building ‘sparse_susie_eval.Rmd’ using rmarkdown --- finished re-building ‘sparse_susie_eval.Rmd’ --- re-building ‘susie_refine.Rmd’ using rmarkdown Quitting from lines 24-33 [unnamed-chunk-1] (susie_refine.Rmd) Error: processing vignette 'susie_refine.Rmd' failed with diagnostics: HTTP response code said error [raw.githubusercontent.com]: The requested URL returned error: 503 --- failed re-building ‘susie_refine.Rmd’ --- re-building ‘susie_rss.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/first-comparison-1.png 360x420 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11593 bytes Input file size = 11683 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9137   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9137 Output IDAT size = 9137 bytes (2456 bytes decrease) Output file size = 9215 bytes (2468 bytes = 21.12% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/second-comparison-1.png 720x420 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18198 bytes Input file size = 18300 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14435   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14435 Output IDAT size = 14435 bytes (3763 bytes decrease) Output file size = 14513 bytes (3787 bytes = 20.69% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/third-comparison-1.png 360x420 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11191 bytes Input file size = 11281 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8700   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8700 Output IDAT size = 8700 bytes (2491 bytes decrease) Output file size = 8778 bytes (2503 bytes = 22.19% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/fourth-comparison-1.png 360x420 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12532 bytes Input file size = 12622 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9672   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9672 Output IDAT size = 9672 bytes (2860 bytes decrease) Output file size = 9750 bytes (2872 bytes = 22.75% decrease) --- finished re-building ‘susie_rss.Rmd’ --- re-building ‘susierss_diagnostic.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susierss_diagnostic_files/figure-html/unnamed-chunk-2-1.png 600x360 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12685 bytes Input file size = 12775 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965 Output IDAT size = 9965 bytes (2720 bytes decrease) Output file size = 10043 bytes (2732 bytes = 21.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susierss_diagnostic_files/figure-html/unnamed-chunk-4-1.png 600x360 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8588 bytes Input file size = 9458 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7727   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7727 Output IDAT size = 7727 bytes (861 bytes decrease) Output file size = 7805 bytes (1653 bytes = 17.48% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susierss_diagnostic_files/figure-html/unnamed-chunk-5-1.png 600x360 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11978 bytes Input file size = 12068 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574 Output IDAT size = 9574 bytes (2404 bytes decrease) Output file size = 9652 bytes (2416 bytes = 20.02% decrease) Quitting from lines 100-114 [unnamed-chunk-6] (susierss_diagnostic.Rmd) Error: processing vignette 'susierss_diagnostic.Rmd' failed with diagnostics: HTTP response code said error [raw.githubusercontent.com]: The requested URL returned error: 503 --- failed re-building ‘susierss_diagnostic.Rmd’ --- re-building ‘trend_filtering.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/trend_filtering_files/figure-html/unnamed-chunk-2-1.png 540x360 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12725 bytes Input file size = 12815 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10169   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10169 Output IDAT size = 10169 bytes (2556 bytes decrease) Output file size = 10247 bytes (2568 bytes = 20.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/trend_filtering_files/figure-html/unnamed-chunk-3-1.png 540x360 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14802 bytes Input file size = 14892 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11627   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11627 Output IDAT size = 11627 bytes (3175 bytes decrease) Output file size = 11705 bytes (3187 bytes = 21.40% decrease) --- finished re-building ‘trend_filtering.Rmd’ --- re-building ‘trendfiltering_derivations.Rnw’ using Sweave --- finished re-building ‘trendfiltering_derivations.Rnw’ SUMMARY: processing the following files failed:   ‘susie_refine.Rmd’ ‘susierss_diagnostic.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR