* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/survey.Rcheck’
* using R Under development (unstable) (2025-02-28 r87848)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-16) 14.2.0
    GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘survey/DESCRIPTION’ ... OK
* this is package ‘survey’ version ‘4.4-2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘survey’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/survey-00install.html' for details.
* used C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the package can be unloaded cleanly ... [1s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking whether startup messages can be suppressed ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [40s/45s] OK
* checking Rd files ... [1s/2s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  svycoplot.Rd: xyplot
  svycoxph.Rd: coxph, predict.coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [17s/20s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [94s/112s] OK
  Running ‘3stage2phase.R’ [2s/3s]
  Running ‘DBIcheck.R’ [2s/3s]
  Running ‘anova-svycoxph.R’ [2s/3s]
  Running ‘api.R’ [2s/2s]
  Running ‘badcal.R’ [2s/2s]
  Comparing ‘badcal.Rout’ to ‘badcal.Rout.save’ ... OK
  Running ‘brewer_cpp.R’ [2s/2s]
  Running ‘bycovmat.R’ [2s/2s]
  Running ‘caleg.R’ [3s/3s]
  Running ‘check.R’ [2s/2s]
  Comparing ‘check.Rout’ to ‘check.Rout.save’ ... OK
  Running ‘confintrep.R’ [2s/2s]
  Running ‘contrast-replicates.R’ [2s/2s]
  Running ‘coxph-termtest.R’ [2s/2s]
  Running ‘deff.R’ [2s/2s]
  Comparing ‘deff.Rout’ to ‘deff.Rout.save’ ... OK
  Running ‘defftest.R’ [2s/2s]
  Running ‘degf-svrepdesign.R’ [2s/2s]
  Running ‘domain.R’ [2s/2s]
  Comparing ‘domain.Rout’ to ‘domain.Rout.save’ ... OK
  Running ‘fpc.R’ [2s/2s]
  Running ‘glm-scoping.R’ [2s/2s]
  Running ‘kalton.R’ [2s/2s]
  Comparing ‘kalton.Rout’ to ‘kalton.Rout.save’ ... OK
  Running ‘logranktest.R’ [2s/2s]
  Running ‘lonely.psu.R’ [2s/2s]
  Comparing ‘lonely.psu.Rout’ to ‘lonely.psu.Rout.save’ ... OK
  Running ‘mtcars-var.R’ [2s/2s]
  Running ‘multistage-rcpp.R’ [2s/2s]
  Running ‘multistage.R’ [2s/2s]
  Running ‘na_action.R’ [2s/2s]
  Running ‘newquantile.R’ [2s/2s]
  Running ‘nwts-cch.R’ [3s/3s]
  Running ‘nwts.R’ [3s/3s]
  Comparing ‘nwts.Rout’ to ‘nwts.Rout.save’ ... OK
  Running ‘poisson.R’ [2s/2s]
  Running ‘pps.R’ [2s/2s]
  Running ‘qrule-swiss.R’ [2s/2s]
  Running ‘quantile.R’ [3s/3s]
  Comparing ‘quantile.Rout’ to ‘quantile.Rout.save’ ... OK
  Running ‘quantiles-chile.R’ [2s/2s]
  Running ‘rakecheck.R’ [2s/2s]
  Comparing ‘rakecheck.Rout’ to ‘rakecheck.Rout.save’ ... OK
  Running ‘raowuboot.R’ [2s/2s]
  Comparing ‘raowuboot.Rout’ to ‘raowuboot.Rout.save’ ... OK
  Running ‘regTermTest-missing.R’ [2s/2s]
  Running ‘regpredict.R’ [2s/2s]
  Comparing ‘regpredict.Rout’ to ‘regpredict.Rout.save’ ... OK
  Running ‘rss_scores.R’ [2s/2s]
  Running ‘scoping.R’ [2s/2s]
  Running ‘survcurve.R’ [4s/5s]
  Comparing ‘survcurve.Rout’ to ‘survcurve.Rout.save’ ... OK
  Running ‘svyby-strings.R’ [2s/2s]
  Running ‘svyby_bug.R’ [2s/2s]
  Running ‘svyby_se.R’ [2s/2s]
  Running ‘svycontrast.R’ [2s/2s]
  Running ‘svyivreg-var.R’ [2s/2s]
  Running ‘svyivreg.R’ [2s/2s]
  Running ‘svyolr-rake-subset.R’ [2s/2s]
  Running ‘svyolr.R’ [2s/2s]
  Running ‘toy_example_for_postStratify.R’ [2s/2s]
  Running ‘twophase.R’ [2s/3s]
  Comparing ‘twophase.Rout’ to ‘twophase.Rout.save’ ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [24s/30s] OK
* checking PDF version of manual ... [7s/9s] OK
* checking HTML version of manual ... [3s/6s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE