- using R Under development (unstable) (2024-12-20 r87452)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-8) 14.2.0
GNU Fortran (Debian 14.2.0-8) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘staRdom/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘staRdom’ version ‘1.1.28’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘staRdom’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/5s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the package can be unloaded cleanly ... [2s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [3s/4s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [17s/26s] OK
- checking Rd files ... [1s/1s] NOTE
checkRd: (-1) abs_parms.Rd:67: Lost braces; missing escapes or markup?
67 | \item $S_{275-295}$ slope between 275 and 295 nm calculated with nonlinear regression
| ^
checkRd: (-1) abs_parms.Rd:68: Lost braces; missing escapes or markup?
68 | \item $S_{350-400}$ slope between 350 and 400 nm calculated with nonlinear regression
| ^
checkRd: (-1) abs_parms.Rd:69: Lost braces; missing escapes or markup?
69 | \item $S_{300-700}$ slope between 275 and 295 nm calculated with nonlinear regression
| ^
checkRd: (-1) abs_parms.Rd:70: Lost braces; missing escapes or markup?
70 | \item SR slope ratio, calculated by $S_{275-295}$/$S_{350-400}$
| ^
checkRd: (-1) abs_parms.Rd:70: Lost braces; missing escapes or markup?
70 | \item SR slope ratio, calculated by $S_{275-295}$/$S_{350-400}$
| ^
checkRd: (-1) abs_parms.Rd:71: Lost braces; missing escapes or markup?
71 | \item E2:E3 ratio $a_{250}$/$a_{365}$
| ^
checkRd: (-1) abs_parms.Rd:71: Lost braces; missing escapes or markup?
71 | \item E2:E3 ratio $a_{250}$/$a_{365}$
| ^
checkRd: (-1) abs_parms.Rd:72: Lost braces; missing escapes or markup?
72 | \item E4:E6 ratio $a_{465}$/$a_{665}$
| ^
checkRd: (-1) abs_parms.Rd:72: Lost braces; missing escapes or markup?
72 | \item E4:E6 ratio $a_{465}$/$a_{665}$
| ^
checkRd: (-1) abs_parms.Rd:73: Lost braces; missing escapes or markup?
73 | \item $a_{254}$ absorbance at 254 nm
| ^
checkRd: (-1) abs_parms.Rd:74: Lost braces; missing escapes or markup?
74 | \item $a_{300}$ absorbance at 300 nm
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
ggeem.Rd: eem_extract
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [19s/34s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [69s/137s] OK
- checking PDF version of manual ... [7s/9s] OK
- checking HTML version of manual ... [2s/4s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 NOTEs