• using R Under development (unstable) (2024-11-20 r87352)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘simPH/DESCRIPTION’ ... OK
• this is package ‘simPH’ version ‘1.3.13’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘simPH’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/21s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) coxsimSpline.Rd:93: Lost braces; missing escapes or markup?     93 | {FD(h[i](t)) = (exp(g(x[j]) - g(x[l])) - 1) * 100}        | ^ checkRd: (-1) simPH.Rd:16-19: Lost braces in \itemize; meant \describe ? checkRd: (-1) simPH.Rd:20-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) simPH.Rd:25-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) simPH.Rd:31-33: Lost braces in \itemize; meant \describe ? checkRd: (-1) simPH.Rd:34-36: Lost braces in \itemize; meant \describe ? checkRd: (-1) simPH.Rd:44-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) simPH.Rd:47-49: Lost braces in \itemize; meant \describe ? checkRd: (-1) simPH.Rd:50-53: Lost braces in \itemize; meant \describe ?
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   coxsimInteract.Rd: coxph, survival, strata   coxsimLinear.Rd: coxph, survival, strata   coxsimPoly.Rd: coxph, survival, strata   coxsimSpline.Rd: coxph, pspline, survival, strata   coxsimtvc.Rd: coxph, survival, strata   ggfitStrata.Rd: plot.survfit, survfit, strata   simGG.siminteract.Rd: scale_colour_brewer, discrete_scale   simGG.simlinear.Rd: scale_colour_brewer, discrete_scale   simGG.simpoly.Rd: scale_colour_brewer, discrete_scale   simGG.simtvc.Rd: scale_colour_brewer, discrete_scale   simPH.Rd: coxph   tvc.Rd: survival, coxph Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [11s/11s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [12s/12s] OK   Running ‘testthat.R’ [12s/12s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [30s/36s] OK
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs