* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘scellpam’ ... ** package ‘scellpam’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/tmp/Rtmp3X74yu/R.INSTALL32d444463e8107/scellpam/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c biodatatojmat.cpp -o biodatatojmat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c buildresults.cpp -o buildresults.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c csvtojmat.cpp -o csvtojmat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c debugpar.cpp -o debugpar.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c diftimehelper.cpp -o diftimehelper.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c dissimmat.cpp -o dissimmat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c dissimmat_full.cpp -o dissimmat_full.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c dissimmat_sparse.cpp -o dissimmat_sparse.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c fastpam.cpp -o fastpam.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c filternames.cpp -o filternames.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c filtersil.cpp -o filtersil.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c fullmatrix.cpp -o fullmatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c jmatrix.cpp -o jmatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c jmatrixaux.cpp -o jmatrixaux.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c mainfastpam.cpp -o mainfastpam.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c matgetcols.cpp -o matgetcols.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c matgetdiag.cpp -o matgetdiag.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c matgetrows.cpp -o matgetrows.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c matinfo.cpp -o matinfo.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c matmetadata.cpp -o matmetadata.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c matwrite.cpp -o matwrite.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c memhelper.cpp -o memhelper.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c silhouette.cpp -o silhouette.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c sparsematrix.cpp -o sparsematrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c symmetricmatrix.cpp -o symmetricmatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c threadhelper.cpp -o threadhelper.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o scellpam.so RcppExports.o biodatatojmat.o buildresults.o csvtojmat.o debugpar.o diftimehelper.o dissimmat.o dissimmat_full.o dissimmat_sparse.o fastpam.o filternames.o filtersil.o fullmatrix.o jmatrix.o jmatrixaux.o mainfastpam.o matgetcols.o matgetdiag.o matgetrows.o matinfo.o matmetadata.o matwrite.o memhelper.o silhouette.o sparsematrix.o symmetricmatrix.o threadhelper.o -lpthread -O2 -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/Rtmp3X74yu/R.INSTALL32d444463e8107/scellpam/src' make[1]: Entering directory '/tmp/Rtmp3X74yu/R.INSTALL32d444463e8107/scellpam/src' make[1]: Leaving directory '/tmp/Rtmp3X74yu/R.INSTALL32d444463e8107/scellpam/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-scellpam/00new/scellpam/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scellpam)