• using R Under development (unstable) (2024-12-19 r87451)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘rsimsum/DESCRIPTION’ ... OK
• this is package ‘rsimsum’ version ‘0.13.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘rstpm2’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘rsimsum’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/10s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [9s/11s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [19s/21s] OK   Running ‘testthat.R’ [18s/21s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [39s/51s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘A-introduction.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/A-introduction_files/figure-html/ex1-plot-bias-1.png 576x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11036 bytes Input file size = 11126 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10096   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9749   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9749 Output IDAT size = 9749 bytes (1287 bytes decrease) Output file size = 9827 bytes (1299 bytes = 11.68% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/A-introduction_files/figure-html/ex1-plot-cov-1.png 576x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12643 bytes Input file size = 12733 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11414   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11201   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11201 Output IDAT size = 11201 bytes (1442 bytes decrease) Output file size = 11279 bytes (1454 bytes = 11.42% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/A-introduction_files/figure-html/ex2-plot-bias-1.png 576x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23841 bytes Input file size = 23943 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19018   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19018 Output IDAT size = 19018 bytes (4823 bytes decrease) Output file size = 19096 bytes (4847 bytes = 20.24% decrease) --- finished re-building ‘A-introduction.Rmd’ --- re-building ‘B-relhaz.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/B-relhaz_files/figure-html/baseline-hazards-1.png 576x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8115 bytes Input file size = 8973 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7115   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7110   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7110 Output IDAT size = 7110 bytes (1005 bytes decrease) Output file size = 7188 bytes (1785 bytes = 19.89% decrease) Quitting from lines 160-185 [fitting-function] (B-relhaz.Rmd) Error: processing vignette 'B-relhaz.Rmd' failed with diagnostics: there is no package called 'rstpm2' --- failed re-building ‘B-relhaz.Rmd’ --- re-building ‘C-plotting.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/plot-est-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 73424 bytes Input file size = 73598 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 56021   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 56021 Output IDAT size = 56021 bytes (17403 bytes decrease) Output file size = 56099 bytes (17499 bytes = 23.78% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/plot-se-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52509 bytes Input file size = 52659 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41566   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41566 Output IDAT size = 41566 bytes (10943 bytes decrease) Output file size = 41644 bytes (11015 bytes = 20.92% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/plot-est-ba-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 61856 bytes Input file size = 62018 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45358   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45358 Output IDAT size = 45358 bytes (16498 bytes decrease) Output file size = 45436 bytes (16582 bytes = 26.74% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/ridge-est-1-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44238 bytes Input file size = 44376 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39395   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39395 Output IDAT size = 39395 bytes (4843 bytes decrease) Output file size = 39473 bytes (4903 bytes = 11.05% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/lolly-bias-1-1.png 672x480 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11684 bytes Input file size = 12551 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10313   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10313 Output IDAT size = 10313 bytes (1371 bytes decrease) Output file size = 10391 bytes (2160 bytes = 17.21% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/lolly-bias-1.1-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11716 bytes Input file size = 12586 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10417   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10417 Output IDAT size = 10417 bytes (1299 bytes decrease) Output file size = 10495 bytes (2091 bytes = 16.61% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/lolly-bias-2-1.png 672x480 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11310 bytes Input file size = 12177 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9829   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9829 Output IDAT size = 9829 bytes (1481 bytes decrease) Output file size = 9907 bytes (2270 bytes = 18.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/lolly-coverage-1-1.png 672x480 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12643 bytes Input file size = 13507 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11125   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11125 Output IDAT size = 11125 bytes (1518 bytes decrease) Output file size = 11203 bytes (2304 bytes = 17.06% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/forest-bias-1-1.png 672x480 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12057 bytes Input file size = 12924 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10628   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10628 Output IDAT size = 10628 bytes (1429 bytes decrease) Output file size = 10706 bytes (2218 bytes = 17.16% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/forest-bias-2-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12836 bytes Input file size = 13706 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11359   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11359 Output IDAT size = 11359 bytes (1477 bytes decrease) Output file size = 11437 bytes (2269 bytes = 16.55% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/zipper-1-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 83145 bytes Input file size = 83343 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61594   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61594 Output IDAT size = 61594 bytes (21551 bytes decrease) Output file size = 61672 bytes (21671 bytes = 26.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/zipper-zoom-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 76367 bytes Input file size = 76553 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 54044   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 54044 Output IDAT size = 54044 bytes (22323 bytes decrease) Output file size = 54122 bytes (22431 bytes = 29.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/heat-bias-1-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14165 bytes Input file size = 14255 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13621   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12766   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12766 Output IDAT size = 12766 bytes (1399 bytes decrease) Output file size = 12844 bytes (1411 bytes = 9.90% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/plot-est-density-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 62960 bytes Input file size = 63122 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49856   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49856 Output IDAT size = 49856 bytes (13104 bytes decrease) Output file size = 49934 bytes (13188 bytes = 20.89% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/plot-est-hex-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 59872 bytes Input file size = 60034 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46726   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46726 Output IDAT size = 46726 bytes (13146 bytes decrease) Output file size = 46804 bytes (13230 bytes = 22.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/add-theme-1.png 672x480 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12179 bytes Input file size = 13043 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10743   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10743 Output IDAT size = 10743 bytes (1436 bytes decrease) Output file size = 10821 bytes (2222 bytes = 17.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/add-theme-default-1.png 672x480 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11684 bytes Input file size = 12551 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10313   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10313 Output IDAT size = 10313 bytes (1371 bytes decrease) Output file size = 10391 bytes (2160 bytes = 17.21% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/heat-bias-viridis-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14413 bytes Input file size = 14503 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13559   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12929   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12929 Output IDAT size = 12929 bytes (1484 bytes decrease) Output file size = 13007 bytes (1496 bytes = 10.32% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/C-plotting_files/figure-html/colour-palette-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45139 bytes Input file size = 45277 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39612   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39612 Output IDAT size = 39612 bytes (5527 bytes decrease) Output file size = 39690 bytes (5587 bytes = 12.34% decrease) --- finished re-building ‘C-plotting.Rmd’ --- re-building ‘D-nlp.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/D-nlp_files/figure-html/nlp-1.png 672x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39298 bytes Input file size = 39424 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33952   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33952 Output IDAT size = 33952 bytes (5346 bytes decrease) Output file size = 34030 bytes (5394 bytes = 13.68% decrease) --- finished re-building ‘D-nlp.Rmd’ --- re-building ‘E-custom-inputs.Rmd’ using rmarkdown --- finished re-building ‘E-custom-inputs.Rmd’ --- re-building ‘F-rsimsumtidyverse.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsimsum.Rcheck/vign_test/rsimsum/vignettes/F-rsimsumtidyverse_files/figure-html/plot-1.png 576x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11036 bytes Input file size = 11126 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10096   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9749   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9749 Output IDAT size = 9749 bytes (1287 bytes decrease) Output file size = 9827 bytes (1299 bytes = 11.68% decrease) --- finished re-building ‘F-rsimsumtidyverse.Rmd’ SUMMARY: processing the following file failed:   ‘B-relhaz.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR