* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/robustlmm.Rcheck’
* using R Under development (unstable) (2025-02-28 r87848)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-16) 14.2.0
    GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘robustlmm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘robustlmm’ version ‘3.3-1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘robustlmm’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/robustlmm-00install.html' for details.
* used C compiler: ‘gcc-14 (Debian 14.2.0-16) 14.2.0’
* used C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
* checking whether the package can be unloaded cleanly ... [3s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
* checking loading without being on the library search path ... [2s/3s] OK
* checking whether startup messages can be suppressed ... [2s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [22s/25s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  compare.Rd: xtable, print.xtable
  fitDatasets.Rd: lmer
  getME.Rd: merMod-class, fixef, glmer, glmerControl, ranef
  prepareMixedEffectDataset.Rd: lmer
  processFit.Rd: lmer
  rlmer.Rd: lmer
  rlmerMod-class.Rd: lmer, fixef.merMod, isGLMM, isLMM, isNLMM, isREML,
    predict.merMod, ranef.merMod, VarCorr.merMod, merMod
  robustlmm-package.Rd: lmer, lme4
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [13s/14s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [60s/71s] OK
  Running ‘DAS-scale.R’ [0s/0s]
  Running ‘DASvar-fallback.R’ [4s/4s]
  Running ‘PsiFunction.R’ [4s/5s]
  Running ‘asymptoticEfficiency.R’ [2s/3s]
  Running ‘compare-methods.R’ [8s/9s]
  Comparing ‘compare-methods.Rout’ to ‘compare-methods.Rout.save’ ... OK
  Running ‘expectations.R’ [0s/0s]
  Running ‘fitDatasets.R’ [22s/25s]
  Running ‘genericFunctions.R’ [3s/4s]
  Running ‘getME.R’ [3s/3s]
  Comparing ‘getME.Rout’ to ‘getME.Rout.save’ ... OK
  Running ‘multipleGroupingFactorsTestData.R’ [0s/0s]
  Running ‘offset.R’ [3s/4s]
  Running ‘psi-rho-funs.R’ [3s/3s]
  Running ‘rlmerMod.R’ [0s/0s]
  Running ‘simulationStudies.R’ [2s/3s]
  Running ‘subset.R’ [0s/0s]
  Running ‘tau.R’ [0s/0s]
  Running ‘testMatrices.R’ [0s/0s]
  Running ‘weights.R’ [5s/5s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [44s/51s] OK
* checking PDF version of manual ... [5s/6s] OK
* checking HTML version of manual ... [1s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE